PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1729.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRF
Protein Properties Length: 635aa    MW: 68972.4 Da    PI: 7.5561
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1729.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.26.8e-24232276145
                           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                   d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  evm.model.supercontig_1729.1 232 DTEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 276
                                   689***************************************985 PP
2QLQ62.79.9e-22162198137
                           QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                   ++FT++Q+++L++Q+l+yKyL an P+P++Ll +i+k
  evm.model.supercontig_1729.1 162 GPFTPSQWMELEHQALIYKYLTANIPIPSNLLIPIRK 198
                                   59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.2E-13162198IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.0E-15163197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.996163198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.834232276IPR014977WRC domain
PfamPF088792.3E-20234275IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MVGSDTSATA SVSASASASF ATLLVSDPET KQKLYGSGLL NKQERSCNNE DDESWRSPKL  60
AKSTDDFSAS KAVSLQQRNS SLLRSSTSSL FSDCHQQMLS FSSPKPEAFS AERTSQNIST  120
FPYFQLTSTS ASSRNNITGY YNNSSGIYNG TNMHGTLAGC RGPFTPSQWM ELEHQALIYK  180
YLTANIPIPS NLLIPIRKAF ESAGFSSFPG SLLRPNSLGW GTFHLGFSNS TDTEPGRCRR  240
TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQSGH SVATTNSKHM VSTTTTTATA  300
TAASSSAAGG GSNGNLTIAQ QQLKTLQPGL TTLSSTATTP GINRMFMNAE NLEDEMQETP  360
GLSMLDSKSK ENSFLIPKQP IPYEEISHDL FGVVSSQSLL NPSHRSSSLM SCRNYGSAQE  420
ISDQETETQH HPLRQFMDDW PKTQSGRSGM SWPEVDRMQS DRTQLSISIP MAASDFMSST  480
SSPSNEKVTL SPLRLSREFD PIQMGLGVGS VINESSQQRQ AHWIPISWEN SVGGPLGEVL  540
HNTSNNTVES KNSSALNLMT EGWDNNSPRL GSSPTGVLQK TAFGSLSNSS AGSSPRMENN  600
RTQEGGSVCN NELMGSNLLL PLCLPCNQFD KQQK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0422957e-58KF042295.1 Bauhinia purpurea GRF2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890978.10.0growth-regulating factor 1-like
TrEMBLA0A061FG660.0A0A061FG66_THECC; Growth-regulating factor 1
STRINGevm.model.supercontig_1729.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Representative plantOGRP33571226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-97growth-regulating factor 1