PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_171.9
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 131aa    MW: 14768.7 Da    PI: 5.5999
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_171.9genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001195117223
                                  EETTTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                  +C+ C+++++++ +L  H +  H
  evm.model.supercontig_171.9  95 SCSVCSRVYPTSRLLSMHVSEaH 117
                                  6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.546792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003554.894117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MAMVVDTKTE FGFPYWTSVL RRFGPDSSFF ASGNIERELL AKQVALDISE DEKNQLQNMI  60
VEESREVFCP IVGCGARLSS LDNFEDHYNA RHSASCSVCS RVYPTSRLLS MHVSEAHDSF  120
FQAKVARGYA M
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_171.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888266.13e-95zinc finger protein 511
TrEMBLA0A2C9UHJ01e-74A0A2C9UHJ0_MANES; Uncharacterized protein
STRINGevm.model.supercontig_171.91e-94(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-70zinc ion binding;nucleic acid binding;zinc ion binding