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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
evm.model.supercontig_170.22 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
C3H |
Protein Properties |
Length: 318aa MW: 35866.2 Da PI: 7.8952 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_170.22 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 44.8 | 2.1e-14 | 244 | 268 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
ktelC+ + +tGtC+yG+ C+FaHg
evm.model.supercontig_170.22 244 KTELCNKWEETGTCPYGNHCQFAHG 268
9***********************8 PP
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2 | zf-CCCH | 20.2 | 1e-06 | 281 | 306 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt +Cr +++ tC+yG rC+F H+
evm.model.supercontig_170.22 281 YKTTICRMVLAGDTCPYGHRCHFRHS 306
9**********55**********998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
GO:0003729 | Molecular Function | mRNA binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MEDDASQPSD AITFYLPGSS SSPPPLTPSD QTDDQREDFA AINFPSPSDS YFPPNSYLPS 60 SLSLSPSPSS SSPSSASTDL TTDRRLHQAR LILEYQQLCE HYDFCVARLR VLTTELDSLR 120 RENVDLRVAN TELLKLLGLS SRAAMCSHLH HPDRTPDLSA QNRTEPSRFE RINVNRRNSL 180 PKSISVRSKG YLKASQQSQG NGDTSRGSCR KQLPCKSVQQ RVRMGKISEE EELELEVYNQ 240 GMLKTELCNK WEETGTCPYG NHCQFAHGIK ELRPVIRHPR YKTTICRMVL AGDTCPYGHR 300 CHFRHSLTEQ ERLVIPR*
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