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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
evm.model.supercontig_17.53 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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| Family |
ARF |
| Protein Properties |
Length: 312aa MW: 34833.6 Da PI: 9.3031 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_17.53 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 77.5 | 1.4e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75
f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L
evm.model.supercontig_17.53 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLV 206
99*****************************8544444..48**************************************** PP
TT-EEEEEE-SSSEE..EEEEE-S CS
B3 76 egDfvvFkldgrsefelvvkvfrk 99
+gD+v+F ++++ +l+++++r+
evm.model.supercontig_17.53 207 AGDSVLFI--WNEKNQLLLGIRRA 228
********..8899999****997 PP
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| 2 | Auxin_resp | 75.5 | 1.5e-25 | 253 | 311 | 1 | 58 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserr 58
aahaa+t+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr
evm.model.supercontig_17.53 253 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRR 311
79*********************************9789****************9986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MRLSSAGFNP QAQEGEKRVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE 60
VDTHIPNYPS LPPQLICQLH NVTMHADLET DEVYAQMTLQ PLSPQEQKDA YLPAELGTPS 120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR 180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM 300
LFETEESSVR R*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF8. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
| Publications
? help Back to Top |
- Liu N, et al.
Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
J. Exp. Bot., 2014. 65(9): p. 2507-20
[PMID:24723401] - Oh E, et al.
Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.
Elife, 2015.
[PMID:24867218] - Minato N, et al.
The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
Sci Rep, 2014. 4: p. 7399
[PMID:25492247] - Ortega-Amaro MA, et al.
Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
Front Plant Sci, 2014. 5: p. 782
[PMID:25653657] - Asahina M,Satoh S
Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
J. Plant Res., 2015. 128(3): p. 381-8
[PMID:25736731] - Batista VG,Pinheiro MP,Melo Filho PA,Santos RC,Lima LM
Temporal and tissue expression of genes involved in buds of earliness cotton cultivar.
Genet. Mol. Res., 2015. 14(3): p. 7386-94
[PMID:26214417] - Li P, et al.
Ca(2+) -regulated and diurnal rhythm-regulated Na(+) /Ca(2+) exchanger AtNCL affects flowering time and auxin signalling in Arabidopsis.
Plant Cell Environ., 2016. 39(2): p. 377-92
[PMID:26296956] - Barik S, et al.
Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
Sci Rep, 2015. 5: p. 14611
[PMID:26459056] - Luo S, et al.
Constitutive Expression of OsIAA9 Affects Starch Granules Accumulation and Root Gravitropic Response in Arabidopsis.
Front Plant Sci, 2015. 6: p. 1156
[PMID:26734051] - Wójcikowska B,Gaj MD
Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
Plant Cell Rep., 2017. 36(6): p. 843-858
[PMID:28255787] - Zhang GZ, et al.
Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
Plant Cell Rep., 2017. 36(12): p. 1995-2006
[PMID:29027578] - Liu Z, et al.
ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
Plant Cell Physiol., 2018. 59(1): p. 179-189
[PMID:29145642]
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