PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_17.220
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 604aa    MW: 66074.1 Da    PI: 8.0068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_17.220genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30255314159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dg++WrKYGqK+ kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  evm.model.supercontig_17.220 255 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILITTYEGTHNHP 314
                                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-32240316IPR003657WRKY domain
SuperFamilySSF1182901.57E-27248316IPR003657WRKY domain
PROSITE profilePS5081128.552250316IPR003657WRKY domain
SMARTSM007742.7E-37255315IPR003657WRKY domain
PfamPF031065.9E-27256314IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MGSPGNHEEE EDSTKEKAAK VGTKRKNPDH DDIKSLSPNQ KDLGCNKQEP IVSNTESSTM  60
EHDSKMISSS ILKEQDNKLE STRAEIGEVR EENQRLKMYL SRIMKDYQTL QMQYYEVIQQ  120
EDQIKKSPHQ SHQETMEESE LFSLSLGRVS NDHSRKDYEK NKEKQDEKDK LEGLSLGLNY  180
KYEVSKSLDT ALPNSSPANS ISDYEIKEEG TETWPPNKAV NTTTVRNTED QEVLQQNAVK  240
KARVSVRARC DTPTMNDGCQ WRKYGQKVAK GNPCPRAYYR CTVAPSCPVR KQVQRCADDM  300
SILITTYEGT HNHPLPMAAT AMASTTSAAA SMLLSGSSSS TSRPSPSNNP PLPLPTTPSN  360
LHGLNFYLSD TSKSKQIFLP NSPLSSTTSY PTITLDLTSS TPSSSSSPFN RFSSQTPRYP  420
STSLNFSSSS QSNTLYWSNG FLTHGNNNNI PQPYIKNLNL GRPSILENNI YQSFLQKNHQ  480
QSMPPDTVAA ATKAITTDPS FQSALRAALT SIIGNNGSSG GISAGNQLGA DKLKWGVEQL  540
PFVSGFSSAT SSKTNGCASS YLNKSSSTTT QSGSLIFLPP PLPFSTSKSA SASPSDHTKD  600
QSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21242316174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_17.220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904805.10.0probable WRKY transcription factor 61
TrEMBLA0A061G4200.0A0A061G420_THECC; WRKY DNA-binding protein 72, putative
STRINGevm.model.supercontig_17.2200.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.18e-63WRKY DNA-binding protein 72