 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_17.200 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 311aa MW: 35365 Da PI: 4.485 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_17.200 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.9 | 1.7e-18 | 90 | 143 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k
evm.model.supercontig_17.200 90 KKRRLRVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 143
45678899*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 126.1 | 1.5e-40 | 89 | 180 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
ekkrrl +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L
evm.model.supercontig_17.200 89 EKKRRLRVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQTSYNTLKTDYDNLL 169
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreelk 92
ke+++L+++++
evm.model.supercontig_17.200 170 KEKDKLKTQVN 180
*******9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MAGGKIYSSG SGGSNISVLI QSKKGPSSSE SLDPLFMSVS STSPFLGSRS MMSFEDVKGG 60
NGSSRSFFRG YDQDDNIEEE LEEYFQQPEK KRRLRVDQVQ FLEKSFEVEN KLEPERKIQL 120
AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YEALQTSYNT LKTDYDNLLK EKDKLKTQVN 180
LLVEQLMERE KEKGNSELTN INSSFQQDLP EKPVAESINS EGEISKACKQ EEISSAKSDI 240
FDSDSPHYTD GVHFEPDQSD LSQDEDDNLS KTLFPAYICS KLDYSDPPTT SCNFGIPVED 300
QDHAFWSWSY *
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 145 | RRARWKTKQ |
