PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_167.15

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 670aa MW: 77598.7 Da PI: 8.5471

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_167.15	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.5e-22	85	168	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ ++ evm.model.supercontig_167.15 85 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RIRKETRTGCPAMIRMRLVDSRRWRILEV 160 69***************************************9988.....999********************** PP FAR1 82 eleHnHel 89 leHnH l evm.model.supercontig_167.15 161 TLEHNHLL 168 ****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.4E-19	85	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-28	287	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.668	551	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	562	589	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	0.0013	563	583	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MVFHTEIEDA ALSSEQVPYG ECLLQMEEAP VSSEQTSDGE CNESLRERNG EIAVLEGKND 60 LVEEKKEFVA PAVGMEFESY DDAYNYYNCY AKEVGFRVRV KNSWFKRNSK EKYGAVLCCS 120 SQGFKRIKDV NRIRKETRTG CPAMIRMRLV DSRRWRILEV TLEHNHLLGN KIYKSIKKMS 180 TGTRRKSKSS SDSEVQKIKL YRALVIDAGG NGNLNSDKRE VRNFSHHPSQ LNLKRGDSQA 240 IYNYFCRMQL TNPNFIYLVD FNDEGHLRNI FWLDARSRAS CGYFGDIIYI DNTYLSCKYE 300 IPLVTFVGIN HHGQSVLLGC GLLAGETTES YIWLFKAWLK CVSGSFPQTI ITDRCKTLQS 360 AITEVFHRSL HRYSLSHIMK KIPEKLGGLR NYDAIRKALI KAIYDTLKVI EFEAAWGFIV 420 QHFGVGDHEW LQSLYEDRAQ WAPVYLKDTV FAGISALRLG EVLGPFFDKY VHKQTPLKEF 480 LDKYELALQK KHKEETLADI ESRNSSPTLK TRCSFELQLS KVYTRDLFKK FPVRVKERVL 540 GEANRREVRD FEVLYNRTAA EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPPKYILPRW 600 KKDYKRVYIP DKGSSHVDAI DYVQWFNQLY RSALQIVEEG VTSLDHYKVA LQAFMESLNR 660 VHDVEQKQE*

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MVFHTEIEDA ALSSEQVPYG ECLLQMEEAP VSSEQTSDGE CNESLRERNG EIAVLEGKND  60
LVEEKKEFVA PAVGMEFESY DDAYNYYNCY AKEVGFRVRV KNSWFKRNSK EKYGAVLCCS  120
SQGFKRIKDV NRIRKETRTG CPAMIRMRLV DSRRWRILEV TLEHNHLLGN KIYKSIKKMS  180
TGTRRKSKSS SDSEVQKIKL YRALVIDAGG NGNLNSDKRE VRNFSHHPSQ LNLKRGDSQA  240
IYNYFCRMQL TNPNFIYLVD FNDEGHLRNI FWLDARSRAS CGYFGDIIYI DNTYLSCKYE  300
IPLVTFVGIN HHGQSVLLGC GLLAGETTES YIWLFKAWLK CVSGSFPQTI ITDRCKTLQS  360
AITEVFHRSL HRYSLSHIMK KIPEKLGGLR NYDAIRKALI KAIYDTLKVI EFEAAWGFIV  420
QHFGVGDHEW LQSLYEDRAQ WAPVYLKDTV FAGISALRLG EVLGPFFDKY VHKQTPLKEF  480
LDKYELALQK KHKEETLADI ESRNSSPTLK TRCSFELQLS KVYTRDLFKK FPVRVKERVL  540
GEANRREVRD FEVLYNRTAA EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPPKYILPRW  600
KKDYKRVYIP DKGSSHVDAI DYVQWFNQLY RSALQIVEEG VTSLDHYKVA LQAFMESLNR  660
VHDVEQKQE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_167.15

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888432.1	0.0	LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 6-like
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2N9G4Y6	0.0	A0A2N9G4Y6_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_167.15	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10788	25	31
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_167.15

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]