PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_167.13

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 667aa MW: 77272.8 Da PI: 6.2155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_167.13	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8.2e-22	59	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ +w++++ e evm.model.supercontig_167.13 59 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENRRWRIIEAE 133 9*************99997.66779**********99888.....************************** PP FAR1 83 leHnHela 90 leHnH ++ evm.model.supercontig_167.13 134 LEHNHLIS 141 ***876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-19	59	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-27	261	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.062	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-5	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MDEVSLNTEP IDDDVDEFEI EGDCGIVEYV GQTSVIQGEN PLPPAVGMEF ESYEDVYFFY 60 NCYAKEQGFG VRVSNTWYRK SKERYRGKLS CSSAGFKKKS EANRPRPETR TGCPAMIKFR 120 LMENRRWRII EAELEHNHLI SPASGKFYKS HKHIGIGTKR TLHLDGPEEA QKIRLFRTMV 180 VDAENNGAID VDNREFSNDV HYNQLKLKEG DAQAIQNYFL HSQLMDPNFF YVVDINEKGY 240 LRNLLWMDAM SRVAYHYFSD VIMIDSSCLT NKYEVPLVSF IGVNHHGQSV LLGCGLVAGE 300 TVESYTWLFR VWLTCMLGRP PQVIITDQCR ILDTTVADVF PRACHCLCLS HITGKVPVKL 360 GGFSDYEAIR TALNRAVYYS LRPEEFETLW EDMIQLYGIK DNKWVQTLYE DRKRWVPVYL 420 KDTFLAGAFP TQQNEVVVSF FEGYLDKHTS LKEFLNKYDQ GLQTNRQLEV LEDMDSKNTS 480 VMLKSRCYYD LQISKLYTNN IVRKFEREVE GMFSCFSTRQ GHVDGPIVTY VVKEEAEGDG 540 NRRETRDFEV LYNATEMEVA CICGLFNYRG YLCRHALYVL KQNGIEEIPS QYILPRWRKD 600 IKRVQVLDQS CTSIDTNNPV HRYDHLYKCI VQVVEEGRKS QDRYKATQQA LDGIMSKLHL 660 VQEHQV*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MDEVSLNTEP IDDDVDEFEI EGDCGIVEYV GQTSVIQGEN PLPPAVGMEF ESYEDVYFFY  60
NCYAKEQGFG VRVSNTWYRK SKERYRGKLS CSSAGFKKKS EANRPRPETR TGCPAMIKFR  120
LMENRRWRII EAELEHNHLI SPASGKFYKS HKHIGIGTKR TLHLDGPEEA QKIRLFRTMV  180
VDAENNGAID VDNREFSNDV HYNQLKLKEG DAQAIQNYFL HSQLMDPNFF YVVDINEKGY  240
LRNLLWMDAM SRVAYHYFSD VIMIDSSCLT NKYEVPLVSF IGVNHHGQSV LLGCGLVAGE  300
TVESYTWLFR VWLTCMLGRP PQVIITDQCR ILDTTVADVF PRACHCLCLS HITGKVPVKL  360
GGFSDYEAIR TALNRAVYYS LRPEEFETLW EDMIQLYGIK DNKWVQTLYE DRKRWVPVYL  420
KDTFLAGAFP TQQNEVVVSF FEGYLDKHTS LKEFLNKYDQ GLQTNRQLEV LEDMDSKNTS  480
VMLKSRCYYD LQISKLYTNN IVRKFEREVE GMFSCFSTRQ GHVDGPIVTY VVKEEAEGDG  540
NRRETRDFEV LYNATEMEVA CICGLFNYRG YLCRHALYVL KQNGIEEIPS QYILPRWRKD  600
IKRVQVLDQS CTSIDTNNPV HRYDHLYKCI VQVVEEGRKS QDRYKATQQA LDGIMSKLHL  660
VQEHQV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_167.13

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888435.1	0.0	protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_021888436.1	0.0	protein FAR1-RELATED SEQUENCE 6-like isoform X2
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A1R3G8K7	0.0	A0A1R3G8K7_COCAP; Uncharacterized protein
STRING	evm.model.supercontig_167.13	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_167.13

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]