PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_165.18

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 187aa MW: 20650 Da PI: 6.7768

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_165.18	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30.8	6.4e-10	12	35	28	51
G2-like 28 tPktilelmkvkgLtlehvkSHLQ 51 P +lelm+v++Ltl+hvkSHLQ evm.model.supercontig_165.18 12 DPEDVLELMNVEDLTLAHVKSHLQ 35 599********************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-8	12	35	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MPLTLLVALK GDPEDVLELM NVEDLTLAHV KSHLQFINNI GGPSMKISYS AEKITSHHLK 60 IRVFPSDRRC LMAERECIIM SNVHHISPNS SNNPAENYIC QKEYITVEVT NVNAEKTNVS 120 FFKIFKATLE QLFAIANFVL ELLAAVFDQL LSSDKLQCAL ISMSISFVGP CSSASLSSFT 180 KVDAKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_165.18

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021893794.1	6e-57	uncharacterized protein LOC110811569
STRING	evm.model.supercontig_165.18	1e-134	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3838	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-07	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_165.18