PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_161.44

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Dof

Protein Properties

Length: 465aa MW: 50248 Da PI: 7.5379

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_161.44	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.8e-39	68	127	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ evm.model.supercontig_161.44 68 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKQF 127 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	61	125	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	70	126	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	72	126	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	74	110	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
ETRSEIAKSE ANGLLQGDAF PSEKSSSFIN IKNEQKSSMQ MNQEQASKQK EDQTETNSAD 60 QERVFKKPDK ILPCPRCNSL DTKFCYFNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG 120 RRKNKQFASQ YRQILVSSDG VPISRLENTE SPNHQLLPSG DSAAAFRPSM GNGTVLKFGP 180 EAPLCESMDS VLNLGEHKRS IEMSSVNCGE NGREPSSCGS PLTASSSRGS GIPGNISQNE 240 QGNFSGTCKE PNSQQPLPCY PVSPLVFPWN PGWNNVTPVA ASQHSSQPVS TANVNNQNPI 300 QWCSTPMVAV PGFCPPNIAL QFVPASYWGC MPVWTAGTGN MPLAASNGCL SPSSSTSNSC 360 CSGNSSPTLG KHSRDPNFKE EAQSEKSILV PKTLRIDDPD EASKSPIWAT LGIKLDQKDP 420 ISRTAIFKAL ETKADGKDHV LDGSHILEAN PAALSRSHTF QESS*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

ETRSEIAKSE ANGLLQGDAF PSEKSSSFIN IKNEQKSSMQ MNQEQASKQK EDQTETNSAD  60
QERVFKKPDK ILPCPRCNSL DTKFCYFNNY NVNQPRHFCK NCQRYWTAGG TMRNVPVGAG  120
RRKNKQFASQ YRQILVSSDG VPISRLENTE SPNHQLLPSG DSAAAFRPSM GNGTVLKFGP  180
EAPLCESMDS VLNLGEHKRS IEMSSVNCGE NGREPSSCGS PLTASSSRGS GIPGNISQNE  240
QGNFSGTCKE PNSQQPLPCY PVSPLVFPWN PGWNNVTPVA ASQHSSQPVS TANVNNQNPI  300
QWCSTPMVAV PGFCPPNIAL QFVPASYWGC MPVWTAGTGN MPLAASNGCL SPSSSTSNSC  360
CSGNSSPTLG KHSRDPNFKE EAQSEKSILV PKTLRIDDPD EASKSPIWAT LGIKLDQKDP  420
ISRTAIFKAL ETKADGKDHV LDGSHILEAN PAALSRSHTF QESS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_161.44

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021888762.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A061F7F7	0.0	A0A061F7F7_THECC; Cycling DOF factor 2, putative isoform 1
STRING	evm.model.supercontig_161.44	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15591	10	17
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-65	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_161.44