PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_161.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 371aa    MW: 42649.8 Da    PI: 6.8902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_161.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000579101323
                                  ET..TTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                                  C+   Cgk+F +   L++H   H
  evm.model.supercontig_161.1  79 CSyeGCGKTFIDAGALRKHSHIH 101
                                  77779**************7766 PP
2zf-C2H216.52.4e-05106130123
                                  EEET..TTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                  y+C+   Cgk F ++s LkrH   H
  evm.model.supercontig_161.1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130
                                  9********************8877 PP
3zf-C2H222.14.1e-07136160123
                                  EEET..TTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                  ++Cp   Cgk Fs   nLk+H++tH
  evm.model.supercontig_161.1 136 FVCPheGCGKAFSLDFNLKSHMKTH 160
                                  89**********************9 PP
4zf-C2H218.27.1e-06166191123
                                  EEET..TTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                  + Cp  dCgk++ + + Lk+Hi++ H
  evm.model.supercontig_161.1 166 HICPyaDCGKRYAHEYKLKNHISSqH 191
                                  68********************9988 PP
5zf-C2H213.80.00017229254123
                                  EEET..TTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                  y Cp   C k + + + Lk H+r+ H
  evm.model.supercontig_161.1 229 YACPydGCEKAYIHEYKLKLHLRReH 254
                                  89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.1E-1472103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003277101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.5E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.3E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
SMARTSM003550.0024106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-14117170No hitNo description
Gene3DG3DSA:3.30.160.602.7E-20127162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553.5E-4136160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.674136165IPR007087Zinc finger, C2H2
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-7163187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974166195IPR007087Zinc finger, C2H2
SMARTSM003550.0074166191IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-9224252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-5226252No hitNo description
SMARTSM003550.0075229254IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972229259IPR007087Zinc finger, C2H2
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
METQFAHNLF DRRPILKSKT PAVKWFREWV PQDVVATGGK CFLMKWVTED TLKKLKEKAK  60
EPEAPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLKSHMKTH SQENYHICPY ADCGKRYAHE  180
YKLKNHISSQ HEKNPTVEVV KYTTPPEKIS KTPKPPAGVY GSGSLDRPYA CPYDGCEKAY  240
IHEYKLKLHL RREHPGHMSE ENAENATLNA DNEMDEGSDQ DAYGKRVNVK SQKQQGRSKP  300
NLKMPPAKMR RRKGLSPSPA TLNVVKKPWL VKEQTFEEDS EETEEERDNV DDGWRYGDNN  360
EDDEETEYED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-33701872119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_161.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888764.10.0zinc finger transcription factor YY1 isoform X1
SwissprotQ2V3L31e-165YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1Q3AZP20.0A0A1Q3AZP2_CEPFO; Zf-H2C2_2 domain-containing protein/zf-C2H2_4 domain-containing protein
STRINGevm.model.supercontig_161.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-159C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]