PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_160.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 402aa    MW: 43318 Da    PI: 5.8099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_160.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10262310355
                                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  evm.model.supercontig_160.32 262 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 310
                                   58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17257326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.01E-11257314No hitNo description
PROSITE profilePS5088815.485259309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16260327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7262310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGGCDNDDLG FRLGGESTMN CPSSGMNSTP IYTKPATGAD PFFPSGWDPI ISLSQHESFG  60
GSTLVSHSEL SNPPYPVMMQ NQGIRGFAPQ YPSGSGYTEM VPKLSCYGSG SFSEIVGSFS  120
LPDQCGQLSN SVCPPNYLPS KEGGNEGTST NVATSHDQDY QMSEADMAAS TLNGKGRKRA  180
LESNSPLNPH KNAENELPND PSGESSDVRN EQDEKRPKAE PSASPNLRGK QAAKQAKDNS  240
NSGEAPKENY IHVRARRGQA TNSHSLAERV RREKISERMR LLQELVPGCN KITGKAVMLD  300
EIINYVQSLQ QQVEFLSMKL ATVNPELNID IERILSKDIL HSRGSNAALL GFGNITGSSH  360
LYPHGIFQGT VPNIPTTNTQ FPSLSHSALD NELQNFLSNG I*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_160.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888810.10.0transcription factor bHLH74 isoform X1
RefseqXP_021888811.10.0transcription factor bHLH74 isoform X1
RefseqXP_021888812.10.0transcription factor bHLH74 isoform X1
RefseqXP_021888813.10.0transcription factor bHLH74 isoform X1
RefseqXP_021888814.10.0transcription factor bHLH74 isoform X1
RefseqXP_021888815.10.0transcription factor bHLH74 isoform X1
RefseqXP_021888816.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A1R3FYM21e-175A0A1R3FYM2_COCAP; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_160.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-85bHLH family protein