PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_16.55
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 758aa    MW: 87112.9 Da    PI: 8.5683
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_16.55genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.21.8e-2044118189
                         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                  +fY+ YA +vGF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw++++++
  evm.model.supercontig_16.55  44 EFYSLYAMRVGFKIRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPAFIRVQRRDSGKWVLDQIQ 111
                                  6***************************************876..............589********************** PP

                         FAR1  83 leHnHel 89 
                                  ++HnHel
  evm.model.supercontig_16.55 112 KDHNHEL 118
                                  *****98 PP
2FAR165.81.1e-20196270189
                         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                                  +fY+ YA+++GF++r+ +  +sk +g+it+r+fvCskeg++++              +r+gC a +++k++++g+w v++l+
  evm.model.supercontig_16.55 196 EFYHIYAESAGFRIRIGQLFRSKVDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDNGTWIVDRLQ 263
                                  6***************************************999..............4899********************* PP

                         FAR1  83 leHnHel 89 
                                  ++HnH+l
  evm.model.supercontig_16.55 264 KDHNHDL 270
                                  *****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1644118IPR004330FAR1 DNA binding domain
PfamPF031012.3E-16196270IPR004330FAR1 DNA binding domain
PfamPF105513.1E-28369461IPR018289MULE transposase domain
PROSITE profilePS5096610.225643679IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-7653676IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-7654681IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MIVKAYPLGM VRLVNNNIVP EDEGESRLEP RVGLEFDSAD EAREFYSLYA MRVGFKIRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CPAFIRVQRR DSGKWVLDQI QKDHNHELGL  120
TEENPVPVPQ QRTPTVAKSS APPRPKVKLL NEVDGGHTSA SGAITVKRLK RAGDAGHPKA  180
EPCAGLEFNS ANEAYEFYHI YAESAGFRIR IGQLFRSKVD GSITSRRFVC SKEGFQHPSR  240
VGCGAFMRIK RQDNGTWIVD RLQKDHNHDL ELGNLKKTSS TSKKLMDDVI GGLDSVDLIE  300
LNNGGLIKTG RENNIGSDWY CLLLEYFQTR QAEDTGFFYS VEVDNGNCMS VFWADSISRF  360
SCSQFGDAVV LDTSYRRGNY LVPFATFVGV NHHKQPVLLA SALIADESKE SFLWLFQTWL  420
RAMSGRRPKS IIADQDLAIQ QAIAQVFPGT HHRFSMWQIR AKEREHFRSL PNEFKYDYEK  480
CIYQSQTTVE FNTMWNAIIN KYGLRENLWL KEMYEKRESW VPLYLRGTFF AGIPLNETIE  540
SFFGTFLTAL TPLREFIPRY EQGLQRRRED ERKEDFNSFN LQAFLQTKEP VEEQCRRLYT  600
LSVFKIFQNE LVQSYNYLGI KTYEEGTISR FSVRKCGNEN EKHAVTFSAS NLNVSCSCQM  660
FEFEGVLCRH VLKVFNLLDI RELPSRYVLH RWTKNAEFGF VRDIESGVSS QELKALMVWS  720
LREAACKYIE SGASSLEKYK LAYEIMREGG KKLCWQR*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_16.55
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021904927.10.0protein FAR1-RELATED SEQUENCE 7-like isoform X1
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A061EMN80.0A0A061EMN8_THECC; FAR1-related sequence 7 isoform 3
TrEMBLA0A061ENQ50.0A0A061ENQ5_THECC; FAR1-related sequence 7 isoform 1
STRINGevm.model.supercontig_16.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]