PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_152.56

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TALE

Protein Properties

Length: 153aa MW: 17945.2 Da PI: 7.663

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_152.56	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.5	6.3e-10	80	114	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ evm.model.supercontig_152.56 80 KWPYPSEQQKLALAESTGLDQKQINNWFINQRKRH 114 569*****************************985 PP
2	ELK	42.7	1.1e-14	34	55	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ evm.model.supercontig_152.56 34 ELKGQLLRKYSGYLGSLKQEFM 55 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01188	2.8E-8	34	55	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	34	54	IPR005539	ELK domain
Pfam	PF03789	1.9E-11	34	55	IPR005539	ELK domain
PROSITE profile	PS50071	13.119	54	117	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-20	56	131	IPR009057	Homeodomain-like
SMART	SM00389	9.9E-13	56	121	IPR001356	Homeobox domain
CDD	cd00086	2.60E-13	57	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-28	59	119	IPR009057	Homeodomain-like
Pfam	PF05920	8.0E-18	74	113	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	92	115	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MQSGCGDGID RNGSSEEEVD VNNEFIDPQA EDRELKGQLL RKYSGYLGSL KQEFMKKRKK 60 GKLPREARQQ LLDWWSRHYK WPYPSEQQKL ALAESTGLDQ KQINNWFINQ RKRHWKPSED 120 MQFVVMDATH PHYYMDNVLG NPFPMDITPT LL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	58	LKQEFMKKRK
2	55	59	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_152.56

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889118.1	1e-112	homeobox protein SBH1
Swissprot	O22299	1e-89	LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBL	D3IWE9	2e-98	D3IWE9_PRUPE; Class I KNOX homeobox transcription factor STM-like 2
STRING	evm.model.supercontig_152.56	1e-111	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6473	26	44
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	5e-89	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_152.56