PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_151.57
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 703aa    MW: 79877.9 Da    PI: 7.478
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_151.57genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-2052145190
                          FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwe 77 
                                   +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+
  evm.model.supercontig_151.57  52 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAYMRIVKKAdfdVPEWR 132
                                   6***************999887455667********************9*******************98877677789** PP

                          FAR1  78 vtkleleHnHela 90 
                                   +t +++ HnHel 
  evm.model.supercontig_151.57 133 ITGFSNVHNHELL 145
                                   ***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-1852145IPR004330FAR1 DNA binding domain
PfamPF105512.0E-22268360IPR018289MULE transposase domain
PROSITE profilePS509669.087509545IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-7517543IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-5520547IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MKEITENAVD SSPDDTGSVE EMPEDTILSR QTSVTLVPFI GQRFVSQDAA YEFYCSFAKQ  60
CGFSIRRHRT RGKDGVGRGI TRRDFTCHRG GYPQLKPSDD GKLQRNRKSS RCGCQAYMRI  120
VKKADFDVPE WRITGFSNVH NHELLKSNDT QLLPAHCTIS ADDKSRICMY AKAGMSVRQM  180
LRLMELEKGV KLGCLPFTEI DVRNLLQSFR NVGRDNDAID LLKMCKYKKD KNPNFKYNFH  240
IDANNRLEHI AWSYTSCIRL YETFGDAIIF DTTCRLDAYD MILGIWLGVD NHGMNCHFGC  300
VLLRDENVQS FSWALKTFLE FMNGKAPETI LTDQNMWLKE AVATEMPSTK HAFCIWHIVA  360
KFSDWFSALL GSKYDKWKAE FYRLYNLHSV EDFEAGWREM VDTYGLHGNK HIVSLYALRS  420
FWALPYLRCY FFAGMTGTFQ SEAINAYIQR FLGAQTFHDN FIEQVAAISE FKDEAGTKTK  480
LQRKVQKVTP KTDETYFIVR HHTNMDGGFK VVWIPHDDFI SCGCHFFEFS GILCRHILRV  540
LSTNNCFHIP DRYLPVRWCD VNSSLMKPFQ SSSSGGYAGK VQLLHSMVST LITESTETEE  600
RLDAACNQIA LVLSRIKEFP GSSNGSGEVA DSDAVDQSFA AGNSHGSITL EKLKERRQRD  660
GADIYRKRRR CCVPCGGQFG HDAADCPMMG GEDMGGDGLG FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1665669RKRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_151.57
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889204.10.0protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_021889205.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLF6HZ840.0F6HZ84_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_151.570.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]