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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_151.27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 31645.8 Da PI: 8.7356 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.8 | 3e-14 | 80 | 127 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 y+G+r+++ +g+W+AeIrdp++ r +lg f taeeAa+a+++ ++k + evm.model.supercontig_151.27 80 YRGIRQRP-WGKWAAEIRDPTK---GVRGRLGPFNTAEEAARAYDREARKSR 127 9*******.**********965...3999****************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.2E-27 | 79 | 142 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-26 | 79 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.732 | 79 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-19 | 79 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-7 | 80 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.39E-26 | 80 | 136 | No hit | No description |
PRINTS | PR00367 | 4.6E-11 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 118 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MCGGAIVADF IRRIRSRRST AVEHWPDSTS ANSDCNDSDK KLNRPEPTRH EPVSLKRTLP 60 TSDDEKQMER TAKRQKKNLY RGIRQRPWGK WAAEIRDPTK GVRGRLGPFN TAEEAARAYD 120 REARKSRGKK SKVNFPSEDD EFIVPTQTKH YNHNPLAIST PAPPLYQTQN RRANFNSVGF 180 GFGYDRNQVA CNSTGFSENH AANATTHEAV ISCCEQNSGI GSGSGSRSDC GYSSSPEFTG 240 RNQNCNNNCG VRVKEEEQKA EAEEEENEVQ KLSEELMATR TR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 80 | 136 | 6 | 63 | ATERF1 |
3gcc_A | 1e-17 | 80 | 136 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_151.27 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889206.1 | 0.0 | ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A445IH11 | 2e-70 | A0A445IH11_GLYSO; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | C6TJ94 | 2e-70 | C6TJ94_SOYBN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_151.27 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 7e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_151.27 |