PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_150.9
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family BBR-BPC
Protein Properties Length: 315aa    MW: 35033.6 Da    PI: 9.9082
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_150.9genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind354.32.6e-10813141301
                    GAGA_bind   1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqr 63 
                                  md++g++e  r k  yy+                ++++l   +++++ms++aerda+irern alsek++a+a+rd+a++qr
  evm.model.supercontig_150.9   1 MDNNGQYEngRYKLdYYKgthstwnmmpqhqvkeQNNALV--MNKKIMSILAERDAAIRERNEALSEKREALAARDEALQQR 80 
                                  999999988998888999********98877753335555..99************************************** PP

                    GAGA_bind  64 dkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeak 145
                                  dkalaer++al erdn+l+al+++ens+++ l   v v +g k ++++   + +++++    + e + ++a+pi++ a ea 
  evm.model.supercontig_150.9  81 DKALAERDNALAERDNALAALQYRENSINFPL---VAVQRGGKRANHSAC-HSSDMTEGL-STGEIQVTDAFPITTIAAEAA 157
                                  **************************966544...788899999998777.556666554.458999999999999998888 PP

                    GAGA_bind 146 ekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224
                                  +++++k++++++   +k  k   k+kk +e+ +k+v++++  ++ ++e++s+d++ln vs+De+t+PvPvCsCtG++rqCYk
  evm.model.supercontig_150.9 158 KSRQTKRTKENNAVTAKPLKsprKVKKVGEDLNKQVASAG--KKCRSEWDSQDVGLNLVSFDETTMPVPVCSCTGVPRQCYK 237
                                  8887776666555444443312377888888888888777..67************************************** PP

                    GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                  WG+GGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f++lL++La+eG+dl+ p+DLk++WA+HGtn+++ti+
  evm.model.supercontig_150.9 238 WGSGGWQSSCCTTTMSSYPLPQMPNKRHARVGGRKMSGSVFTRLLSRLAGEGHDLAIPLDLKNYWARHGTNRYITIK 314
                                  ****************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.8E-1661314IPR010409GAGA-binding transcriptional activator
PfamPF062174.0E-1011314IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDNNGQYENG RYKLDYYKGT HSTWNMMPQH QVKEQNNALV MNKKIMSILA ERDAAIRERN  60
EALSEKREAL AARDEALQQR DKALAERDNA LAERDNALAA LQYRENSINF PLVAVQRGGK  120
RANHSACHSS DMTEGLSTGE IQVTDAFPIT TIAAEAAKSR QTKRTKENNA VTAKPLKSPR  180
KVKKVGEDLN KQVASAGKKC RSEWDSQDVG LNLVSFDETT MPVPVCSCTG VPRQCYKWGS  240
GGWQSSCCTT TMSSYPLPQM PNKRHARVGG RKMSGSVFTR LLSRLAGEGH DLAIPLDLKN  300
YWARHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_150.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889291.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_021889292.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-153BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A1Q3BZ770.0A0A1Q3BZ77_CEPFO; GAGA_bind domain-containing protein
STRINGevm.model.supercontig_150.90.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-155basic pentacysteine 4