PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C3H

Protein Properties

Length: 452aa MW: 49494.5 Da PI: 7.4485

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_150.6	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.6e-06	103	128	4	26
---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG...tCkyGdrCkFaHg 26 lC+ a+tG C+y d+C+F+H+ evm.model.supercontig_150.6 103 NLCPEVAKTGdtsACPYKDKCRFSHD 128 59***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.072	99	129	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.422	99	130	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.5E-4	103	130	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	35	140	165	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.291	143	168	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	2.7E-9	325	367	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	8.97E-6	329	367	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003824	Molecular Function	catalytic activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MEDSAAEVAD LPLVEGDNPP SALTMEKDSN GFGQATPEEL VSRAIAPVKR EFLRPPPSRT 60 TEQQNDAIQE AQAKPSQPGL LKEKKSKRQL KRERREEKKS AMNLCPEVAK TGDTSACPYK 120 DKCRFSHDLE AFNAQKPVDL EGECPFMSPG ASCPYGVTCR FAGTHKDGGQ VGFSTLGKRS 180 SEINILNKDF QKLLWKNKVR FPKADAKLKS FGLQGKAYSK KMLEDKKEAN QIMSNGSLGD 240 DENDCTRVSN STAETRSALE APSGVNPNET CATDEPPLKK AKSNDDVDVL KKDNARAEQE 300 GVEDIIVTDS DESLKLHPRE KKLIDFREKL YLAPLTTVGN LPFRRLCKAL GADITCGEMA 360 MCSNLLQVCL CPLLCLPLVI DDGTANKVVL IQNTASTMQG FSLEYPLSKK LFLIYPSVSF 420 SLNNSLLRRV TVLGSCLAVG DKYLGDKYLG T*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MEDSAAEVAD LPLVEGDNPP SALTMEKDSN GFGQATPEEL VSRAIAPVKR EFLRPPPSRT  60
TEQQNDAIQE AQAKPSQPGL LKEKKSKRQL KRERREEKKS AMNLCPEVAK TGDTSACPYK  120
DKCRFSHDLE AFNAQKPVDL EGECPFMSPG ASCPYGVTCR FAGTHKDGGQ VGFSTLGKRS  180
SEINILNKDF QKLLWKNKVR FPKADAKLKS FGLQGKAYSK KMLEDKKEAN QIMSNGSLGD  240
DENDCTRVSN STAETRSALE APSGVNPNET CATDEPPLKK AKSNDDVDVL KKDNARAEQE  300
GVEDIIVTDS DESLKLHPRE KKLIDFREKL YLAPLTTVGN LPFRRLCKAL GADITCGEMA  360
MCSNLLQVCL CPLLCLPLVI DDGTANKVVL IQNTASTMQG FSLEYPLSKK LFLIYPSVSF  420
SLNNSLLRRV TVLGSCLAVG DKYLGDKYLG T*

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_150.6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889313.1	0.0	LOW QUALITY PROTEIN: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	1e-104	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A061DYQ2	1e-134	A0A061DYQ2_THECC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	evm.model.supercontig_150.6	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5751	12	13

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_150.6

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]