PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1481.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | G2-like | ||||||||
Protein Properties | Length: 163aa MW: 18155.4 Da PI: 8.9064 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 35.2 | 2.7e-11 | 114 | 163 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+++L +F +v+ L ++A Pk+ l +m+v+ Lt +v+SH Q evm.model.supercontig_1481.3 114 KQRMVWNHDLELEFTAVVSAL-RDKEARPKSTLSFMDVPELTQPQVASHKQ 163 79*******************.8899***********************77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-6 | 111 | 163 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 112 | 163 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.6E-10 | 114 | 163 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MDITLKALPD GVCFCLEKPI SPQNVRDVWH HGIKKNRSNE IGSIKEGENG NGVGENQAKA 60 NPQSIPVSNR KEPNARPRNG QSKVRKIRSA FENTSVNAAW EEGEEDKGGN CAKKQRMVWN 120 HDLELEFTAV VSALRDKEAR PKSTLSFMDV PELTQPQVAS HKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1481.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893863.1 | 1e-105 | putative two-component response regulator-like APRR6 | ||||
STRING | evm.model.supercontig_1481.3 | 1e-118 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8222 | 3 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.1 | 2e-11 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1481.3 |