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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_146.5 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
bZIP |
Protein Properties |
Length: 493aa MW: 55046.1 Da PI: 10.1419 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_146.5 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 36.1 | 1.4e-11 | 88 | 147 | 1 | 60 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
+ke +r +r+ +NR++A+ R+RKk ++ eLe +++eL+ N +L +++++l +e l+
evm.model.supercontig_146.5 88 DKEYRRLKRLLRNRVSAQQARERKKVYVNELESRAQELQDRNAKLEEKISTLVNENTMLR 147
58899***********************************************99987665 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005886 | Cellular Component | plasma membrane |
GO:0016021 | Cellular Component | integral component of membrane |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0004252 | Molecular Function | serine-type endopeptidase activity |
GO:0008270 | Molecular Function | zinc ion binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 493 aa
Download sequence Send
to blast |
MVNPRTHDSF VTVGSSFGGS HILMTSTQSS SKVEESDEDL LMVPDVEAPR SCTNNKTSSS 60 CGVNDNNGMI NPESPNQPKR RKGRNPVDKE YRRLKRLLRN RVSAQQARER KKVYVNELES 120 RAQELQDRNA KLEEKISTLV NENTMLRKTP PSTRAAKLEL GSEGFGMANW SAGRGRASRG 180 MLPLLALHAV TEYYRLPWKP PVTAGLLAAN TLIYLRPGFF HHTLPSIDEV WFNPHLIIKH 240 RDLKRFFLSP FYHLGESHLV YNMMSLLWKG TQLETSMGST EFASMVAALL AMSQGITVLL 300 AKSLLFFNYE RPYFYEYSAG FSGVLFAMKV VLHSQSEDYT NVHGLVVPAR YAAWAELILI 360 QMFVPGVSFL GHLGGVLAGI LYLKLKGGYS GSDPLTVAIR GLTGVLSWPI RFLRNRFESG 420 WQRTSGRRTF GRGLSSSASV GVWRCPACTY DNSNLLSICE MCGTGQSGNR LFSSSQGIPL 480 EELRRRRVER FG*
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Functional Description ? help
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Source |
Description |
UniProt | Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in the heat-shock response pathway. {ECO:0000303|PubMed:22007993}. |
Publications
? help Back to Top |
- Tripathi LP,Sowdhamini R
Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics, 2006. 7: p. 200 [PMID:16895613] - García-Lorenzo M,Sjödin A,Jansson S,Funk C
Protease gene families in Populus and Arabidopsis. BMC Plant Biol., 2006. 6: p. 30 [PMID:17181860] - Lemberg MK,Freeman M
Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases. Genome Res., 2007. 17(11): p. 1634-46 [PMID:17938163] - Kmiec-Wisniewska B, et al.
Plant mitochondrial rhomboid, AtRBL12, has different substrate specificity from its yeast counterpart. Plant Mol. Biol., 2008. 68(1-2): p. 159-71 [PMID:18543065] - Knopf RR,Adam Z
Rhomboid proteases in plants - still in square one? Physiol Plant, 2012. 145(1): p. 41-51 [PMID:22007993]
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