PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_146.5

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 493aa MW: 55046.1 Da PI: 10.1419

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_146.5	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.1	1.4e-11	88	147	1	60
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +ke +r +r+ +NR++A+ R+RKk ++ eLe +++eL+ N +L +++++l +e l+ evm.model.supercontig_146.5 88 DKEYRRLKRLLRNRVSAQQARERKKVYVNELESRAQELQDRNAKLEEKISTLVNENTMLR 147 58899***********************************************99987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.3E-12	88	152	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-12	89	148	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.817	90	147	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.13E-12	91	147	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-14	92	148	No hit	No description
PROSITE pattern	PS00036	0	95	110	IPR004827	Basic-leucine zipper domain
CDD	cd14704	5.89E-16	102	143	No hit	No description
SuperFamily	SSF144091	6.67E-27	198	384	No hit	No description
Gene3D	G3DSA:1.20.1540.10	2.4E-18	199	383	IPR022764	Peptidase S54, rhomboid domain
Pfam	PF01694	1.1E-21	239	384	IPR022764	Peptidase S54, rhomboid domain
SuperFamily	SSF90209	1.02E-7	441	465	IPR001876	Zinc finger, RanBP2-type
SMART	SM00547	0.0017	441	465	IPR001876	Zinc finger, RanBP2-type
PROSITE pattern	PS01358	0	443	462	IPR001876	Zinc finger, RanBP2-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0004252	Molecular Function	serine-type endopeptidase activity
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MVNPRTHDSF VTVGSSFGGS HILMTSTQSS SKVEESDEDL LMVPDVEAPR SCTNNKTSSS 60 CGVNDNNGMI NPESPNQPKR RKGRNPVDKE YRRLKRLLRN RVSAQQARER KKVYVNELES 120 RAQELQDRNA KLEEKISTLV NENTMLRKTP PSTRAAKLEL GSEGFGMANW SAGRGRASRG 180 MLPLLALHAV TEYYRLPWKP PVTAGLLAAN TLIYLRPGFF HHTLPSIDEV WFNPHLIIKH 240 RDLKRFFLSP FYHLGESHLV YNMMSLLWKG TQLETSMGST EFASMVAALL AMSQGITVLL 300 AKSLLFFNYE RPYFYEYSAG FSGVLFAMKV VLHSQSEDYT NVHGLVVPAR YAAWAELILI 360 QMFVPGVSFL GHLGGVLAGI LYLKLKGGYS GSDPLTVAIR GLTGVLSWPI RFLRNRFESG 420 WQRTSGRRTF GRGLSSSASV GVWRCPACTY DNSNLLSICE MCGTGQSGNR LFSSSQGIPL 480 EELRRRRVER FG*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MVNPRTHDSF VTVGSSFGGS HILMTSTQSS SKVEESDEDL LMVPDVEAPR SCTNNKTSSS  60
CGVNDNNGMI NPESPNQPKR RKGRNPVDKE YRRLKRLLRN RVSAQQARER KKVYVNELES  120
RAQELQDRNA KLEEKISTLV NENTMLRKTP PSTRAAKLEL GSEGFGMANW SAGRGRASRG  180
MLPLLALHAV TEYYRLPWKP PVTAGLLAAN TLIYLRPGFF HHTLPSIDEV WFNPHLIIKH  240
RDLKRFFLSP FYHLGESHLV YNMMSLLWKG TQLETSMGST EFASMVAALL AMSQGITVLL  300
AKSLLFFNYE RPYFYEYSAG FSGVLFAMKV VLHSQSEDYT NVHGLVVPAR YAAWAELILI  360
QMFVPGVSFL GHLGGVLAGI LYLKLKGGYS GSDPLTVAIR GLTGVLSWPI RFLRNRFESG  420
WQRTSGRRTF GRGLSSSASV GVWRCPACTY DNSNLLSICE MCGTGQSGNR LFSSSQGIPL  480
EELRRRRVER FG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in the heat-shock response pathway. {ECO:0000303\|PubMed:22007993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_146.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021889495.1	0.0	rhomboid-like protein 14, mitochondrial isoform X1
Swissprot	Q8RXW0	1e-144	RBL14_ARATH; Rhomboid-like protein 14, mitochondrial
TrEMBL	A0A2H5PX59	1e-167	A0A2H5PX59_CITUN; Uncharacterized protein
STRING	evm.model.supercontig_146.5	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17609.2	1e-41	HY5-homolog

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_146.5

Publications ? help Back to Top
Tripathi LP,Sowdhamini R Cross genome comparisons of serine proteases in Arabidopsis and rice. BMC Genomics, 2006. 7: p. 200 [PMID:16895613] García-Lorenzo M,Sjödin A,Jansson S,Funk C Protease gene families in Populus and Arabidopsis. BMC Plant Biol., 2006. 6: p. 30 [PMID:17181860] Lemberg MK,Freeman M Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases. Genome Res., 2007. 17(11): p. 1634-46 [PMID:17938163] Kmiec-Wisniewska B, et al. Plant mitochondrial rhomboid, AtRBL12, has different substrate specificity from its yeast counterpart. Plant Mol. Biol., 2008. 68(1-2): p. 159-71 [PMID:18543065] Knopf RR,Adam Z Rhomboid proteases in plants - still in square one? Physiol Plant, 2012. 145(1): p. 41-51 [PMID:22007993]