PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_146.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family SBP
Protein Properties Length: 1009aa    MW: 112303 Da    PI: 7.5135
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_146.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.99.5e-41149225278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   Cqve+C++dls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  evm.model.supercontig_146.32 149 CQVEDCKTDLSSAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 225
                                   **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-32143210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.932146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.5E-38147228IPR004333Transcription factor, SBP-box
PfamPF031103.8E-29149222IPR004333Transcription factor, SBP-box
SMARTSM002481400779808IPR002110Ankyrin repeat
SuperFamilySSF484031.52E-8780895IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-8783896IPR020683Ankyrin repeat-containing domain
CDDcd002041.83E-8784895No hitNo description
SMARTSM002484.4836866IPR002110Ankyrin repeat
SMARTSM00248460876905IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MDGRFGGKPH NLYGPVVSDL KTVGKKSLEW DLNDWKWDGD LFTANPVNPL PSDCRSRQLF  60
PIGPEIGTKG NANNSSSSDE VNAVNNSKGK RELDKRRRVT VVEDEELNGE EAGSLNLKLG  120
GHVYPVTDGD AKSGKKTKIA ATPSNRALCQ VEDCKTDLSS AKDYHRRHKV CDMHSKASKA  180
LVGNVMQRFC QQCSRFHVLQ EFDEGKRSCR RRLAGHNKRR RKTHPENITN GASLPDERSS  240
SYLLISLLRI LSNMHSNNTD QSNDQDLLSH LLKNLATLAG SSNGENLSGL LRESQGLLST  300
GTSLGKLNKV TDVALNGPEA ARTSSAPGSD YPIVFRPAGQ CGSKPASDLA EKRKLASDVQ  360
DQNSLPVKVN EKEATASRMR MNNIDLNNVY DDSLDYGENL ENSHPLVTPG LCSANKSLWL  420
HPDSNKSSPP EFSRNSDSTS SQSPSTSSGE AQSRTDRIVF KLFGKDPSDF PAVLRREILD  480
WLSHSPTDIE SYIRPGCIVL TIYLRLGKST WDEIYFDLGS SLRKLLDASR DSLWRTGWVY  540
ARVQHCVAFV YNGQVVLDTP LPLKSHKNCR ITSIRPIALP VSGRTQFVVK GFNLYRSTTR  600
LFCALEGRYL VQETCSDLMD SNDASSEHDE LQFLTFSCSI PNVSGRGFIE VEDYGLSSSF  660
FPFIVAEEDV CSEICMLEGV IEIVESDDNN QKRAEKIESK NQALDFMHEM GWLLHRNHLK  720
FRLGHLDPNP ELFSFKRFKW LMEFSLDHDW CAVVKKLLSI FFNGTVDSGN HSSIKLALLD  780
MCLLHRAVHR NCRPMVELLL RYVPDKELEK PRSEQMQHVD SVLEDLMFKP NVVGPAGLTP  840
LHVAASAAGS ENILDALTDD PGSVGIEAWK TARDSTGLTP NDYACMRGHY SYIHLVQRKI  900
SKKSESGHVV LNIPNTFMDC KPSEGLKPAK FTSLDSIEAK AAQRHCRLCE QKLAYGTSRT  960
SLVYRPVMLS MVAIAAVCVC VALLFKSSPE VLCVFRPFRW ELLEYGAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-301482221084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19498KRRRV
2217223KRRRKTH
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_146.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889469.10.0squamosa promoter-binding-like protein 1
RefseqXP_021889471.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A061EPW10.0A0A061EPW1_THECC; Squamosa promoter-binding protein, putative isoform 1
STRINGevm.model.supercontig_146.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]