PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_142.14
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 350aa    MW: 38330.6 Da    PI: 4.8348
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_142.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-102763161055
                                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  evm.model.supercontig_142.14 276 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 316
                                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-14269331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12271325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-12275320No hitNo description
PfamPF000105.5E-8276316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESFGAFLEG DNPWEPEFMQ YSTVFPLDDN EFFSISSFCS VPQIPNMSFI NGDSTTLFGS  60
MNSTASGLSS GSEESSYGSY CTDIVQNNFT AHNHVAVTND VPDSVYSMDF VGFDEKNKSI  120
LCVVPEMIME DTGCAEEDLG GKKIAGANLV DSQPPYDAVL ANQLQLKQKF SPEIHPVTRN  180
GIVSAESTKK RTRVSGHAEE SGKSDKRKKK YQKVSQNRSS YEESINGGLD GQSSSGCSSE  240
DENTSEAKAT SSAANVNGKT RASRGTATDP QSLYARKRRE RINERLKILQ NLVPNGTKVD  300
ISTMLEEAVH YVKFLQLQIK LLSSDDLWMY APIAYNGIDI GLHQKISLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188209KKRTRVSGHAEESGKSDKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_142.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889614.10.0transcription factor bHLH85
TrEMBLA0A061FFD11e-84A0A061FFD1_THECC; Root hair defective 6-like 2, putative
STRINGevm.model.supercontig_142.140.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-60root hair defective 6-like 4