PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_141.19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 496aa MW: 54853.6 Da PI: 5.9022 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.4e-11 | 314 | 359 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L evm.model.supercontig_141.19 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVYYINEL 359 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.7E-54 | 25 | 207 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 9.68E-17 | 302 | 371 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.52 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.23E-12 | 313 | 364 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.1E-16 | 314 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 314 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-14 | 316 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.52 | 427 | 495 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MDELIISPSS SSSLVSFSQE PTTALQQRLQ FIVQTQPESW AYAIFWQTLN DDNGRIYLGW 60 GDGHFQGAKE NNTSTNTNHH LFHTHRRKDV MKGIQALLGD THNDMINVSM MDGSDVTDVE 120 WFYVMSLTRS FPAGDGGPGK ALTTGSLVWL TGGHELQLYS CDRAKEANMH GIETLVFVPT 180 SNGVLELGSS DLIRENWSLV QQVKSLFASD LITLVSKQPS PNPTPIPFLD RNISFADIGI 240 IAGVQEEDAS PKDRDNKEPR KDSSPAKPGQ SSFVDSENSD SDCPLMNNVG PIVEKKLHKK 300 RGRKPGLGRE TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVYYINELK 360 GKIEELESQL QKESKKVKLE MADNLETQST TTSVDQTKSN NSGTGSGGSN IGGGLEIEVK 420 VVGNDAVIRV QSENVNYPAA RLMSALRELE FQVHHASMSC INELMLQDIV VRVPEASRTD 480 QDALKSALLR RLDHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-33 | 24 | 207 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 2e-33 | 24 | 207 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 2e-33 | 24 | 207 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 2e-33 | 24 | 207 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_141.19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889655.1 | 0.0 | transcription factor MYC2 | ||||
TrEMBL | A0A061DS37 | 0.0 | A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein | ||||
STRING | evm.model.supercontig_141.19 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3039 | 21 | 63 | Representative plant | OGRP8004 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 8e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_141.19 |