PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_141.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 496aa    MW: 54853.6 Da    PI: 5.9022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_141.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11314359454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  evm.model.supercontig_141.19 314 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVYYINEL 359
                                   799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5425207IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474599.68E-17302371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.52310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-12313364No hitNo description
Gene3DG3DSA:4.10.280.107.1E-16314375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9314359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.52427495IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDELIISPSS SSSLVSFSQE PTTALQQRLQ FIVQTQPESW AYAIFWQTLN DDNGRIYLGW  60
GDGHFQGAKE NNTSTNTNHH LFHTHRRKDV MKGIQALLGD THNDMINVSM MDGSDVTDVE  120
WFYVMSLTRS FPAGDGGPGK ALTTGSLVWL TGGHELQLYS CDRAKEANMH GIETLVFVPT  180
SNGVLELGSS DLIRENWSLV QQVKSLFASD LITLVSKQPS PNPTPIPFLD RNISFADIGI  240
IAGVQEEDAS PKDRDNKEPR KDSSPAKPGQ SSFVDSENSD SDCPLMNNVG PIVEKKLHKK  300
RGRKPGLGRE TPLNHVEAER QRREKLNHRF YALRAVVPNV SRMDKASLLS DAVYYINELK  360
GKIEELESQL QKESKKVKLE MADNLETQST TTSVDQTKSN NSGTGSGGSN IGGGLEIEVK  420
VVGNDAVIRV QSENVNYPAA RLMSALRELE FQVHHASMSC INELMLQDIV VRVPEASRTD  480
QDALKSALLR RLDHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-33242078192Transcription factor MYC3
4rqw_B2e-33242078192Transcription factor MYC3
4rs9_A2e-33242078192Transcription factor MYC3
4yz6_A2e-33242078192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_141.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889655.10.0transcription factor MYC2
TrEMBLA0A061DS370.0A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGevm.model.supercontig_141.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-89bHLH family protein