PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1401.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family TCP
Protein Properties Length: 482aa    MW: 53102.7 Da    PI: 9.0539
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1401.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP155.82.5e-481292962135
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................. 65 
                                    gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikelt+                  
  evm.model.supercontig_1401.1 129 NGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKSAIKELTEIsmprgknttaysgggks 209
                                   58**************************************************************66666544444443221 PP

                           TCP  66 .ssssaseceaesssssasnsssg................................kaaksaakskksqksaasalnlake 113
                                    s     + ++es          +                                  +++ ak+kks ++a   +nla+e
  evm.model.supercontig_1401.1 210 aS-----S-TSES----------EvvsggiifkdstykeingqdegdiavnesfmgVINPKGAKNKKSCHKAPGSNNLARE 274
                                   11.....1.1122..........1223344444445556666677788899999974444444777777777778****** PP

                           TCP 114 srakarararertrekmriknk 135
                                   sr karararert ekm++k  
  evm.model.supercontig_1401.1 275 SRDKARARARERTMEKMKMKGA 296
                                   *******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-47130294IPR005333Transcription factor, TCP
PROSITE profilePS5136937.5131189IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.666273290IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MFPSSGNNST YSPFPFTISA SFAANQNPNS THEENYPSPF FHFPSSFLDD DNEFLMNQLL  60
PQQRILSSAP CNLVSDYNST HEVNNNNSTT VASTGRKSTK NVTSSGKKRS SKGGNGNGAA  120
KQMVPRKRNG KKDRHSKIYT AQGPRDRRMR LSLQIARKFF DLQDMLGFDK ASKTIEWLFS  180
KSKSAIKELT EISMPRGKNT TAYSGGGKSA SSTSESEVVS GGIIFKDSTY KEINGQDEGD  240
IAVNESFMGV INPKGAKNKK SCHKAPGSNN LARESRDKAR ARARERTMEK MKMKGALDPN  300
YIKQCSDHEA GNPNEFEHLA SSKELKSSGK AVIEEEDQEV QEPSLHLLQH QMDSVGIIEK  360
FLGIMNSDSS TVDSREANYP DYTGNWMINR DVSTLCESIK RSSSTGNVVQ VQNPSSIFMI  420
NPDAQEENTT SFFMTNSAMK GRNQHSSIFS NAHDQRNPSS IFISTSSIGL MGSHLSCSSD  480
AX
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1401.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892929.10.0transcription factor TCP12, partial
STRINGevm.model.supercontig_1401.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-37TCP domain protein 12