 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_140.14 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
SRS |
| Protein Properties |
Length: 303aa MW: 33780.3 Da PI: 7.2092 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_140.14 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 221.3 | 1.9e-68 | 81 | 236 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskr 74
r+g+++CqdCGnqakkdCah RCRtCCksrgf+C+th+kstWvpaakrrerqqq +a++++++ ++ +e+++kr
evm.model.supercontig_140.14 81 RQGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCHTHLKSTWVPAAKRRERQQQFSALQNQNQDHQqqqqllqfREENPKR 161
7899**************************************************999988887776556666555555555 PP
DUF702 75 krelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+re+ + + +l+st+l+++ + le++++P+ev+s+a+frcvrvs+vdd +eelaYqtav+igGhvfkGiLydqG+e+
evm.model.supercontig_140.14 162 QREN--QGACSLASTRLPTS---SGLEIENFPQEVNSTALFRCVRVSAVDDPDEELAYQTAVNIGGHVFKGILYDQGTES 236
5554..55666666666655...57899*************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MAGFFYLGGR EGGTSSKQEE DKEENNLYLY RSNEEIYNKG FEIWPEYYQQ NTSSFSFGVG 60
PSRRTSLGDD WSSRSGFTLM RQGGMNCQDC GNQAKKDCAH LRCRTCCKSR GFQCHTHLKS 120
TWVPAAKRRE RQQQFSALQN QNQDHQQQQQ LLQFREENPK RQRENQGACS LASTRLPTSS 180
GLEIENFPQE VNSTALFRCV RVSAVDDPDE ELAYQTAVNI GGHVFKGILY DQGTESRYNM 240
DHHHQHLNLI TASTTAATTT TTAAGAGTST NPAGTPLLDP SLFPAPLNAF IAGTQFFPPP 300
RS*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
