PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 603aa    MW: 65855.2 Da    PI: 6.6249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30257316159
                                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                  ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg+Hnh+
  evm.model.supercontig_14.32 257 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCAEDMSILITTYEGTHNHP 316
                                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-32242318IPR003657WRKY domain
SuperFamilySSF1182909.55E-28250318IPR003657WRKY domain
PROSITE profilePS5081129.264252318IPR003657WRKY domain
SMARTSM007741.8E-37257317IPR003657WRKY domain
PfamPF031062.6E-27258316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MRKFIYAEQQ CVYTTKRKEE TPFKSIYMEL VLKMAEPDAS VQEEITCKEE PTKVGFGREY  60
EDGGGLCSSS PRTRMDDKNG QEDELESAKA EMGEVREENE RLKLMLEKIE KDYKSLQLRF  120
FSFLKQESSR KSESSAPNSH DFEDEEPELV SLCLGRNPKE AKKEEKITAR DFNKAKEDGG  180
DHLKASLTLG LDSKSQLSGE LSPENSSEEP KEEEAGEIWP PSKIQKTMKS GDDEAAQQNH  240
VKRARVCVRA RCDAPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPGCP VRKQVQRCAE  300
DMSILITTYE GTHNHPLPIS ATAMASTTSA AASVLLSGSS TLSTQSAMVS SSVTAYSSTD  360
QFHGSNFSLY DSSRTKQFYL PNTSMSLLPT VTLDLTTPLS SSSSTNFNRF SNQRFPSTSF  420
NFSSSDKSTI NLPTIWGNGY PASFGTLPYT QTQIGPFSNF AQQSHEQSSS SNYNLEKSQQ  480
AAASQQSLTE TLTKAITTDP SFQSVIAAAI STMVAGSGTN AGAEQEKSGK EINCGQNLIQ  540
AVAVSNNSSS QDGAKGCGSS YFNGLLSSSK PKTGGLNQPP LPFSIFKVAT SLPTSVNKEK  600
KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22244318174WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905289.10.0probable WRKY transcription factor 72
SwissprotQ9LXG81e-130WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A061EM500.0A0A061EM50_THECC; WRKY DNA-binding protein 72, putative
STRINGevm.model.supercontig_14.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-94WRKY DNA-binding protein 72