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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_14.230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | G2-like | ||||||||
Protein Properties | Length: 75aa MW: 8766.49 Da PI: 5.765 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 32.8 | 1.5e-10 | 6 | 35 | 27 | 56 |
G2-like 27 AtPktilelmkvkgLtlehvkSHLQkYRla 56 +t k+i+e+++ +gLt e+vkSH Q+YRl+ evm.model.supercontig_14.230 6 TTSKQIKEIIQAEGLTSEQVKSHHQRYRLH 35 689*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-8 | 6 | 37 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-8 | 7 | 35 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
MIRLTTTSKQ IKEIIQAEGL TSEQVKSHHQ RYRLHHDHVR QFCHHDVIQS NFTDDDDDDD 60 NDANQHVVKA FEEN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_14.230 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905360.1 | 3e-20 | uncharacterized protein LOC110820240 | ||||
STRING | evm.model.supercontig_14.230 | 5e-47 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15410 | 7 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25790.1 | 1e-07 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_14.230 |