PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_14.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 93aa    MW: 10430.8 Da    PI: 8.5214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_14.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-0821591654
                                 HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                          HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                 i +  ++Lr+llP+ +   +s K+s + +L+++++YI+sL
  evm.model.supercontig_14.15 21 IVELVSKLRQLLPEiR-DRRSDKVSASKVLQETCNYIRSL 59
                                 5566789*******76.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.226559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-81975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-91979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-52159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSQA ATSSRITDDQ IVELVSKLRQ LLPEIRDRRS DKVSASKVLQ ETCNYIRSLH  60
REVDDLSERL SQLLATIDAD SAEASIIRSL IM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_14.15
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905365.11e-56transcription factor PRE6-like
SwissprotQ9LJX11e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8HQL71e-50A0A1U8HQL7_GOSHI; transcription factor PRE5-like
STRINGevm.model.supercontig_14.155e-56(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-37bHLH family protein