PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WRKY

Protein Properties

Length: 98aa MW: 10867.2 Da PI: 9.8609

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_14.134	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	59.5	6.3e-19	4	41	22	59
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+ evm.model.supercontig_14.134 4 RSYYKCTSAGCSVRKHVERASTDPKAVITTYEGKHNHD 41 9************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118290	7.72E-15	3	43	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.7E-18	4	43	IPR003657	WRKY domain
PROSITE profile	PS50811	23.089	4	43	IPR003657	WRKY domain
SMART	SM00774	2.1E-9	4	42	IPR003657	WRKY domain
Pfam	PF03106	1.4E-13	4	41	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
YIYRSYYKCT SAGCSVRKHV ERASTDPKAV ITTYEGKHNH DVPAARNSSH NTVSNNASQL 60 KPQQAVAGKY PLLRDMDFGS SDKRPVLLQL KEEKITV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-21	4	44	38	78	Probable WRKY transcription factor 4
2lex_A	3e-21	4	44	38	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_14.134

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021905342.1	1e-62	serine/threonine-protein kinase STE7 homolog, partial
Swissprot	Q9ZQ70	4e-23	WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBL	A0A0L9U2B1	1e-46	A0A0L9U2B1_PHAAN; Uncharacterized protein
TrEMBL	A0A140H8S7	3e-46	A0A140H8S7_MANES; WRKY transcription factor 73
TrEMBL	A0A445DBK0	1e-48	A0A445DBK0_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_14.134	3e-67	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27674	3	3
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	2e-25	WRKY DNA-binding protein 3

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_14.134

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Aamir M, et al. Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach. Front Plant Sci, 2017. 8: p. 819 [PMID:28611792]