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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_139.80 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ARF | ||||||||
Protein Properties | Length: 814aa MW: 89778 Da PI: 6.7431 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.2 | 3.6e-24 | 179 | 280 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L evm.model.supercontig_139.80 179 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLA 258 99****************************963.3445679**************************************** PP TT-EEEEEE-SSSEE..EEEEE-S CS B3 76 egDfvvFkldgrsefelvvkvfrk 99 +gD v+F + +++el+++++r+ evm.model.supercontig_139.80 259 SGDAVLFL--RGEDGELRLGIRRA 280 ********..449999*****996 PP | |||||||
2 | Auxin_resp | 123.9 | 1.1e-40 | 305 | 386 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 +a+a+stks+F+v+Y+Pras++eFv++++k+ k++++++++G+Rf+m+fe+eds+err+sG+v+g+ dldp rWpnSkWr+ evm.model.supercontig_139.80 305 VANAVSTKSMFHVFYSPRASHAEFVIPYQKYIKSITSPICIGTRFRMKFEMEDSPERRCSGVVIGIGDLDPHRWPNSKWRC 385 689****************************************************************************** PP Auxin_resp 82 L 82 L evm.model.supercontig_139.80 386 L 386 9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.03E-44 | 172 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-40 | 173 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.63E-22 | 177 | 279 | No hit | No description |
SMART | SM01019 | 1.7E-23 | 179 | 281 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-22 | 179 | 280 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 179 | 281 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.3E-35 | 305 | 386 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-6 | 677 | 769 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.29E-10 | 685 | 764 | No hit | No description |
PROSITE profile | PS51745 | 21.718 | 685 | 767 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MEIDLNYAAT EVVEKSNTNV PCNGDCHKAS GCVSCCLTSS SSSSSSSNSS SAPGSSSPSS 60 IYLELWHACA GPLTSLPKKG NVVVYVPQGH LEQAAAAASA SPFSTMEMPT FDLNPQIFCR 120 VVNVQLLANK ENDEVYTQVT LLPQPEFVGL NSEGKEAAEL GLEEEGRGGS LTKSTPHMFC 180 KTLTASDTST HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR 240 RHLLTTGWSI FVSQKNLASG DAVLFLRGED GELRLGIRRA ARPRNGLPDA IIAKQNSYPS 300 ILSLVANAVS TKSMFHVFYS PRASHAEFVI PYQKYIKSIT SPICIGTRFR MKFEMEDSPE 360 RRCSGVVIGI GDLDPHRWPN SKWRCLMVRW DEDMVSDHHE RVSPWEIDPS VSLQPLSIQS 420 SPRLKKLRTG MQATPPDNPV TAGGGGFLDF EESVRPSKVL QGQENVGFVS PLYGCDTVNR 480 SLDFDLQSNA HQSLASTRTE NSKISEFMRA QPQTYASFAE SNRFPGVLQG QEICPFRSLR 540 QNADYNIGSW GKSNLNFNSF NIYQATKPSL YPLASEGPRN IYFPYGGIYR AGQDPMIRPY 600 ATNFPRESVT FATSSIQNRI IGDGIRNPSL LKEHKPPENI PTASSFKTNI GCQKEEGFNG 660 TGCKLFGFSL TGETATSNPQ SSGKRSCTKV SKQGSLVRRA IDLSRLNGYD ELLNELERLF 720 SMEGLLRDPD KGWRVLYTDS ENDVMVVGDD PWHEFCDVVS KIHIYTKEEV EKMTLGVIND 780 DTQSCLEQAP VIMEASKSSS VGQPDSSPTV IRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-121 | 44 | 409 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-121 | 44 | 409 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_139.80 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889763.1 | 0.0 | auxin response factor 4 isoform X1 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A1R3HLK2 | 0.0 | A0A1R3HLK2_COCAP; Auxin response factor | ||||
STRING | evm.model.supercontig_139.80 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Representative plant | OGRP10049 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_139.80 |