PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_139.43
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family AP2
Protein Properties Length: 464aa    MW: 50809.8 Da    PI: 7.635
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_139.43genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17158207155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  evm.model.supercontig_139.43 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                                   78*******************......55************************997 PP
2AP2271.2e-08250289144
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                                   s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa 
  evm.model.supercontig_139.43 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAAS 289
                                   89********.7******5553..2.26**********889996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-15158215IPR016177DNA-binding domain
PfamPF008475.2E-9158207IPR001471AP2/ERF domain
SMARTSM003801.1E-31159221IPR001471AP2/ERF domain
CDDcd000182.02E-11159214No hitNo description
Gene3DG3DSA:3.30.730.106.3E-17159215IPR001471AP2/ERF domain
PROSITE profilePS5103217.609159215IPR001471AP2/ERF domain
CDDcd000181.17E-12250288No hitNo description
SuperFamilySSF541712.55E-8250289IPR016177DNA-binding domain
SMARTSM003803.5E-5251299IPR001471AP2/ERF domain
PROSITE profilePS510328.557251288IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-5251289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MLDLDLNVDS AESNQNGDSF SEKLPQGSGN QMDESGTSNS SIVNADASSN GGGEEDSCST  60
RAFMLNFDIL KVGGGGRGSE NDAVVTKEFF PVSGSSEGHG KDFGNSEGQS SKSWIDLSFE  120
RGKQEGGTVG GGGDELRVVQ QASQPAKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFILSDYE DDLKQMKNLT KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAASM VKEIHNVKSF  300
QFVCRMMKYV IVMSISMPSS VYVLYDLHAQ MENSMPAALV DPPFKGLART SDPPFFWNGL  360
YPGLFPSEER AMEKRIELGS PQGLPNWAWQ MHSQVSAATP VPLFSTAASS GFSYSATPPS  420
AAIFPSKSLN HLTVHNLCFT PPSSAAANTS QFQYQMKPPH APT*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_139.43
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889761.10.0ethylene-responsive transcription factor RAP2-7
SwissprotQ9LVG21e-113TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A067L6P31e-173A0A067L6P3_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_139.430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-117related to AP2.7