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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_139.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WOX | ||||||||
Protein Properties | Length: 233aa MW: 26063.6 Da PI: 8.9752 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 5.1e-20 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Lee++++ r+p+a+++++++++l +++ ++V++WFqN++a++++ evm.model.supercontig_139.11 7 SRWCPTPEQVMILEEMYRSgIRTPNASQIQQITSHLssygKIEGKNVFYWFQNHKARDRQ 66 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 121.1 | 4.4e-39 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ++iLee+y+sG+rtPn+++iq+it++L++yGkie+kNVfyWFQN+kaR+rqk evm.model.supercontig_139.11 6 SSRWCPTPEQVMILEEMYRSGIRTPNASQIQQITSHLSSYGKIEGKNVFYWFQNHKARDRQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.236 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-4 | 4 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-11 | 5 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 7 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.7E-18 | 7 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.58E-5 | 8 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSPSGSSRWC PTPEQVMILE EMYRSGIRTP NASQIQQITS HLSSYGKIEG KNVFYWFQNH 60 KARDRQKMRR KLAKQLLLQQ QLLHHQYILQ QNQAKHGCHL GNNYLFGVLQ SPASASGSTS 120 AFQNQLSCCN VNLSSAAAPY NFLPHQGSGA DREDNHKQMM SHMWMVDKIP DKSAVDQMME 180 KTSMMRMNGC DWTMMDHVDP ALAPPPGLSS AASSSTRPPL ETLQLFPVNP SN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_139.11 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889750.1 | 1e-175 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1R3J959 | 1e-58 | A0A1R3J959_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_139.11 | 1e-175 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-43 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_139.11 |