PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_138.5
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 328aa    MW: 34801 Da    PI: 6.6028
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_138.5genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.9e-111154344
                                 SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
              Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                 +W+ e d+ + +a + ++ +   +W++Ia  ++ g+tl+++k+++
  evm.model.supercontig_138.5 11 SWSREQDKAFENALATYPEDstdRWERIAGDVP-GKTLEEIKHHY 54
                                 7********************************.**********9 PP
2Myb_DNA-binding39.31.5e-12104148347
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  +WT++E+ l++ +  + G+g+W++I+r +  +Rt+ q+ s+ qky
  evm.model.supercontig_138.5 104 AWTEDEHRLFLLGLDKCGKGDWRSISRNFVVTRTPTQVASHAQKY 148
                                  6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.21762IPR017884SANT domain
SMARTSM007174.8E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-51058IPR009057Homeodomain-like
SuperFamilySSF466894.67E-111066IPR009057Homeodomain-like
PfamPF002496.3E-81154IPR001005SANT/Myb domain
CDDcd001671.90E-81154No hitNo description
PROSITE profilePS5129416.50396153IPR017930Myb domain
SuperFamilySSF466891.36E-15100154IPR009057Homeodomain-like
SMARTSM007174.2E-9101151IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.2E-17101151IPR006447Myb domain, plants
PfamPF002491.5E-10104148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-10104147IPR009057Homeodomain-like
CDDcd001677.34E-9104149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTGDEAGGSS SWSREQDKAF ENALATYPED STDRWERIAG DVPGKTLEEI KHHYDLLVDD  60
VNRIESGCVP LPAYNSSEGS TSQAGDEGTG SKSRSDQEHR KGIAWTEDEH RLFLLGLDKC  120
GKGDWRSISR NFVVTRTPTQ VASHAQKYFL RLNSTNKDRR RSSIHDITSV GNGDISAPQG  180
PITGQTNVSV AGGCSGKSTK EPPQPPAGPP VVSMYGALTI DQPISGPLVS AVGAPVNLPA  240
PPHMAYGVRA PVPGAVVSGV PMNMGPMTYP RAPVPGTVVP GVPMNMGPMT YPRVPVPGTV  300
VPGVPMNMGP MTYSTPHTAH ESFMQYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-18780679RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_138.5
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889847.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-121SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0B0PER01e-154A0A0B0PER0_GOSAR; Transcription factor MYB1R1
STRINGevm.model.supercontig_138.50.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-109MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]