PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_138.48
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 534aa    MW: 59186.1 Da    PI: 6.4233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_138.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002788105219
                                   EETTTTEEESSHHHHHHH CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                                   +C++Cgk Fs++ ++  H
  evm.model.supercontig_138.48  88 SCENCGKEFSSWKSFLEH 105
                                   6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.5E-51335No hitNo description
SMARTSM003555.31335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5171335IPR007087Zinc finger, C2H2
PfamPF139120.00411335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576677.5E-582106No hitNo description
SMARTSM0035520087107IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.07E-7244267No hitNo description
SMARTSM003550.13245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076245272IPR007087Zinc finger, C2H2
PfamPF139121.8E-9245269IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
SuperFamilySSF576679.07E-7332359No hitNo description
PROSITE profilePS501579.369337359IPR007087Zinc finger, C2H2
SMARTSM003550.44337359IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-13337360IPR007087Zinc finger, C2H2
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MALIEDQHSH FKHYCRICKK GFGCGRALGG HMRAHGIGDD TAHIDDDDDD HASDWEAAAG  60
PNAPPPPTTN KRMYALRTNP NRFKNCRSCE NCGKEFSSWK SFLEHGKCTS DDDEEDDEGD  120
DDSLLSSPGS DADDGLIQRR GGGSGNWSKR KRSFRAKVFG SSHCPSSEEE DLANCLMMLS  180
NATVDAFIVE PEESCASASK DEIQRNYLPL NFVSNNNTNN NNNDYTTIVT ANRDKAKGVV  240
TKGMFECKAC KKVFNSHQAL GGHRASHKKV KGCFAAKIDH LKDNNNNNNN NNNIDDQDHD  300
VITHEEFFPT KSMSTMQFDH GTIGVGATSS KRKSKIHECS ICHRVFSSGQ ALGGHKRCHW  360
ITSNSLAETS SLPKFNHHHH QFHEQQGPNN NNNLFKNPTV DQTLDLTLDL NLPAPGIDHH  420
NPHKRNTTNI ISGQVSTEIF LQPLVGVKHE KQISRSQDHD NSDNNNVTIN HKDENCDESL  480
KNMVLDDEAD SKVKLAKLSE LKDMKMINEG SSPWLQMGIG STTDQVGDDP EKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_138.48
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889866.10.0zinc finger protein ZAT9-like
TrEMBLA0A2H5NP130.0A0A2H5NP13_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_138.480.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13535616
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-24C2H2-like zinc finger protein