 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
evm.model.supercontig_1379.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 311aa MW: 35540.5 Da PI: 4.4532 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| evm.model.supercontig_1379.1 | genome | ASGPB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.1 | 1.4e-18 | 84 | 138 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k+
evm.model.supercontig_1379.1 84 KKRRLTATQVQFLERSFEVENKLEPERKLQLAKELGLQPRQVAIWFQNRRARFKN 138
56689***********************************************995 PP
|
| 2 | HD-ZIP_I/II | 127.4 | 6.2e-41 | 84 | 174 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82
kkrrl++ qv++LE+sFe e+kLeperK +la+eLglqprqva+WFqnrRAR+k+kqlE+dy++Lk+++d+lk+++++L k
evm.model.supercontig_1379.1 84 KKRRLTATQVQFLERSFEVENKLEPERKLQLAKELGLQPRQVAIWFQNRRARFKNKQLERDYDSLKASFDKLKADHDKLLK 164
9******************************************************************************** PP
HD-ZIP_I/II 83 eveeLreelk 92
e+e+L++el
evm.model.supercontig_1379.1 165 ENEALKQELV 174
******9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MAGIKVCGNP NMALFLQNEK LPSSPQLLES LWIPTSSNLH GSRSMVDFEK VTEGEAIDAG 60
FFQAMDREEN VDEDYDTCLN PPGKKRRLTA TQVQFLERSF EVENKLEPER KLQLAKELGL 120
QPRQVAIWFQ NRRARFKNKQ LERDYDSLKA SFDKLKADHD KLLKENEALK QELVSIQNKL 180
IHQDKMKEKN LEPADQEINL SNEDEPNLPL MMTLKQEDVS SAKSDVFDSD SPHYTDGNQS 240
SLGEPADSSH VFEADHSDFS QDEDDNNLSK SLLQPQWFLK MEGDSTYGHD DMAANSCSFV 300
FDQPIWSWLY *
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 131 | 139 | RRARFKNKQ |
