PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_137.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 344aa    MW: 40236.6 Da    PI: 9.3376
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_137.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.53.7e-2350112163
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                                   +W +qe+++ i++r e+e++++ +k++k+lWe vs+kmrerg++r+p qCk+kw+nl +ryk+
  evm.model.supercontig_137.19  50 QWGHQETKDFIAIRAELEKDFKVAKRNKTLWEIVSSKMRERGYRRTPDQCKCKWKNLVNRYKA 112
                                   7************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3443107IPR017877Myb-like domain
CDDcd122031.73E-2449111No hitNo description
PfamPF138371.1E-1749112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAYREEEVMF GGGDNEALGG ISGMASSLLS PAETASGRGR EERAPQNQPQ WGHQETKDFI  60
AIRAELEKDF KVAKRNKTLW EIVSSKMRER GYRRTPDQCK CKWKNLVNRY KASFSLSQMY  120
NICVYKLRLL LIKKAFHTIN KLEKDLNRGK ETSDLDNGRQ CPFFEELHAV FIERAKSMQR  180
LLVGSGVGCD QAKKKMKRIS GDRSSDEFSE EDDDNDDESE AARSKVRKRK AERNVLEKSS  240
KAVNAGNASS NVSSDIHEML KEFFQQQQRM EMQWREMMER RALERQLFEQ EWRQSMEKLE  300
KERLMVELAW REKEEQRRMR EESRAERRDA LLTTLLNKLI NEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_137.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889923.10.0trihelix transcription factor GT-3b-like
TrEMBLA0A371F1K11e-132A0A371F1K1_MUCPR; Trihelix transcription factor GT-3b (Fragment)
STRINGevm.model.supercontig_137.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17512910
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.17e-23Trihelix family protein