PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_136.17
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 538aa    MW: 60067 Da    PI: 6.1233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_136.17genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.72.1e-1411675371374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l+++L++cA+avs++dl +a++l+ +l++l+s +g+p+qRlaay++e+L arla+s+s++ykal+++e +   sse l+++
  evm.model.supercontig_136.17 167 LKQVLIACAKAVSDNDLLMAHWLMDQLRQLVSVSGEPIQRLAAYMLEGLVARLASSGSSIYKALRCREPA---SSELLSYM 244
                                   5799*****************************************************************9...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++++ev+P++kf+++ aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l  
  evm.model.supercontig_136.17 245 HILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIAQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLGI 325
                                   ********************************************************************998899999**** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +g+rL+k+A++++vpfef+  ++ +  +++l++L v+pgEalaVn++++lh+++desvs+e++rd++L+lvksl Pkvv++
  evm.model.supercontig_136.17 326 VGKRLSKLAKQFNVPFEFHG-AEMSGCEVQLKDLGVRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLFPKVVTL 405
                                   ********************.888999****************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   veqe+++n++ F+ rfle+l+yy+a+f+s++++lpre++eri+vE+++l+r++vn++acegaer+erhe l+kWr+r+++a
  evm.model.supercontig_136.17 406 VEQESNTNTAAFFLRFLETLNYYTAMFESIDVTLPREHKERINVEQHCLARDVVNIIACEGAERVERHELLGKWRSRFTMA 486
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   GF+++pls+ +++++k ll+ ++++ yr+ee++g+l+lgW++r Lv+ +aW+
  evm.model.supercontig_136.17 487 GFTQYPLSTLVNATIKKLLQSYSEK-YRLEERDGALYLGWMNRDLVASCAWK 537
                                   ***********************65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.45141518IPR005202Transcription factor GRAS
PfamPF035147.4E-139167537IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSSGSYYQPL QEAEAYCFPQ FQTLDHRLCY SENNSQGVYM SVKNSHEQYC TLESSSANGN  60
YSVYNCSSTA SFSPSGSPTS QQESQSYPPD LHRSPDNTYG SPLSGSCVTD DMNDFRHKLR  120
ELETVMFGPD PDIIGGIDSG LLNRNSGGSQ EMNIWTLITE AVSRGDLKQV LIACAKAVSD  180
NDLLMAHWLM DQLRQLVSVS GEPIQRLAAY MLEGLVARLA SSGSSIYKAL RCREPASSEL  240
LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DENRVHIIDF QIAQGSQWIT LIQAFAARPG  300
GPPHIRITGI DDSTSAYARG GGLGIVGKRL SKLAKQFNVP FEFHGAEMSG CEVQLKDLGV  360
RPGEALAVNF AFMLHHMPDE SVSTENHRDR LLRLVKSLFP KVVTLVEQES NTNTAAFFLR  420
FLETLNYYTA MFESIDVTLP REHKERINVE QHCLARDVVN IIACEGAERV ERHELLGKWR  480
SRFTMAGFTQ YPLSTLVNAT IKKLLQSYSE KYRLEERDGA LYLGWMNRDL VASCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-621695376375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_136.17
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890002.10.0scarecrow-like transcription factor PAT1
RefseqXP_021890003.10.0scarecrow-like transcription factor PAT1
RefseqXP_021890004.10.0scarecrow-like transcription factor PAT1
RefseqXP_021890005.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A438DQ250.0A0A438DQ25_VITVI; Scarecrow-like transcription factor PAT1
STRINGevm.model.supercontig_136.170.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]