PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.45
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 233aa    MW: 26490.5 Da    PI: 7.1672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.45genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-155801798
                                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                            B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                   +p kf +e+g+ k++s  + l  + g +W+v++  rk++ + +l++GW+eF++   L  g fvvF+++g+ +f  +  +f+
  evm.model.supercontig_132.45  5 NIPSKFWREFGSGKPSS--VELLAPCGAVWKVEV--RKRDHEAWLQNGWEEFAEHYSLSYGHFVVFRHEGDGKF--HTLIFD 80
                                  69********8776665..9999***********..*******************************9887666..888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.239182IPR003340B3 DNA binding domain
SMARTSM010191.2E-4182IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-20482IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-18589IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-12580IPR003340B3 DNA binding domain
CDDcd100177.66E-16680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MQQHNIPSKF WREFGSGKPS SVELLAPCGA VWKVEVRKRD HEAWLQNGWE EFAEHYSLSY  60
GHFVVFRHEG DGKFHTLIFD MTATEIDYPI VGPNGESSNL REGDKDEGGD NDSPVEILDS  120
PESPSRKRRD KDESGEDDNS VEILDSSESP CRKRREISPL PCPKPSKSLR TNSTSEKAGE  180
RHGGFVSDSQ RCRQEKICKR VQPLIADEKL RALQKGYRKL RALQKGYRFQ VQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130RKRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890129.11e-169B3 domain-containing protein At1g49475-like
STRINGevm.model.supercontig_132.451e-172(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein