PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_132.44
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 275aa    MW: 30986.6 Da    PI: 8.1902
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_132.44genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-112653797
                                  EEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                            B3 37 tledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                                  +l+++ g sW+v +++     r+  g+++++  Wk F++ n++++gD++vF+l++r++ +++v ++
  evm.model.supercontig_132.44  2 ILQTSAGGSWTVGYKVivqsdRGICGAFLFK--WKAFAEKNNIEVGDVCVFQLIDRTKLSFKVIIY 65
                                  789999********99655544444448888..*********************988887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.09E-9165No hitNo description
Gene3DG3DSA:2.40.330.106.8E-9167IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-9165IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-9166IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182168IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MILQTSAGGS WTVGYKVIVQ SDRGICGAFL FKWKAFAEKN NIEVGDVCVF QLIDRTKLSF  60
KVIIYQNDDS PDCFQSQGMS VTTPPKCQKS EANLSVEPPT PNEIDCHRDL DFNFKNSFFL  120
VYIPKELAKI HLKGSYGEVK LRAQDGRSWN VGYNMQFNVV IKRATEDANY GLSTEHGDEY  180
KKLRGETGLE NIHKYSCLTT ARATEAANKF VSKYPFFLVV VRSYHLKYSQ MVTSKLIPLI  240
CFVKRIPENS LQPGDICAFE LIEGSDIVLK VSLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_132.44
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890120.19e-58B3 domain-containing transcription factor VRN1-like isoform X2
STRINGevm.model.supercontig_132.440.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Representative plantOGRP1718538