PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_131.7
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 419aa    MW: 45977.1 Da    PI: 6.0131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_131.7genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-07316356954
                                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  evm.model.supercontig_131.7 316 ARQRRERISERIRVLQRLVPGG-----IKMDTASMLDEAANYLKFL 356
                                  69******************96.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-12312370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-11315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4316356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDIGFGWDSA EVVTNTSSSL WSGNPGEMEE SLLMSNSNSC IYGAKMDLTD HVLTNSVSHD  60
HHQTASHEQS HVVSNMNLLQ CHYEASSNLA QNIMQAAKSS SWGDGLTSEL CPAASLESLD  120
CLISATNSNT DASVEDDGIS MIFSDCRNLW NFPTAASSGE SGNNPGKYEE NKCGLNDQVN  180
ETAFQTSSDH QVNHMKKRRS KVKADGDLQN YGHLNLVQTD SCTTEGGGFM LISENPQKCK  240
KPRSDKQSSN ISFQLQPSSS SVSSCMEEAD AEAIAQMKEM IYRAAAFRPV NLGLEMVEKP  300
RRKNVRISTD PQTVAARQRR ERISERIRVL QRLVPGGIKM DTASMLDEAA NYLKFLRSQV  360
KALENLSHRP DSATPLTTTL AFASNSSSLV FPLTAHSFPV QSNLQNLNYH IQHYPTQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KKRRSK
2297303EKPRRKN
3298303KPRRKN
4316321RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_131.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890297.10.0transcription factor bHLH87 isoform X2
SwissprotQ8S3D22e-81BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A1R3HKY61e-117A0A1R3HKY6_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_131.70.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Representative plantOGRP10281610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]