PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_131.40
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Dof
Protein Properties Length: 234aa    MW: 25049.6 Da    PI: 8.3649
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_131.40genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.44.1e-401979262
                        zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                                  ++++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn k+s
  evm.model.supercontig_131.40 19 EQEQLKCPRCDSNNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNIPVGGGSRKNTKRS 79
                                  57899****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-291478IPR003851Zinc finger, Dof-type
PfamPF027012.7E-332177IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.452377IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQDPASTFHQ AMMKPQFPEQ EQLKCPRCDS NNTKFCYYNN YNLSQPRHFC KSCRRYWTKG  60
GALRNIPVGG GSRKNTKRSS NNPKRHANSS DPNPTRKAPE PAPPSLSTAT SQQMASNQGV  120
LGSGLDQDPN RVYGLSVEQD RKVLDMGMNG SFSSLLASNG QFGSILEGLN PNGSSLKMVQ  180
MGDLGENLGS GHGLDLVSDS GIGLQGNNNG NDNGGGESYC WSGSSNGWPD LAI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_131.40
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8572732e-34DQ857273.1 Glycine max Dof22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890177.11e-172dof zinc finger protein DOF3.1-like
SwissprotO821551e-46DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLB9MWQ53e-87B9MWQ5_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_131.401e-171(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.16e-49DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]