PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_130.47
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 278aa    MW: 31927.8 Da    PI: 9.2899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_130.47genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025111134123
                                   EEETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                   ++C++C+ksF    +L +H  + H
  evm.model.supercontig_130.47 111 WQCGYCKKSFYEEKYLDKHFDNrH 134
                                   58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.58111134IPR007087Zinc finger, C2H2
PROSITE patternPS000280113134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MALRSNRISC LLLCVLIALD SSWKVSSSIF PPLQDHQDYK ESEAARNPGS AHEVHCSRER  60
SRAAWTIIQQ HLMPFVEKER YHLPSGCKLH PDNDLYRDQE QHKVQLDINE WQCGYCKKSF  120
YEEKYLDKHF DNRHYDMLNL NQSRCLADIC GALHCDLAIN LMPRKTKCNP AAAAKNQHLC  180
ESLANSCFPV NEGLSASRLH ELFMHQFCKA HTCSGRKKPF SRQSKKRTSV LYIAFSIFIL  240
SLLPLFYGFI YLYQSGIKRG TQGLKRISQG GRKKKSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_130.47
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890377.10.0uncharacterized protein LOC110808992
TrEMBLA0A061ECD51e-131A0A061ECD5_THECC; Zinc finger family protein
TrEMBLA0A2H5P7Q81e-130A0A2H5P7Q8_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_130.470.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Representative plantOGRP484655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-100C2H2-like zinc finger protein