PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Trihelix

Protein Properties

Length: 401aa MW: 44707.1 Da PI: 5.2587

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_130.35	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.4	5.9e-26	69	141	2	74
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 W ++e+++Li++rre++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ + + evm.model.supercontig_130.35 69 WVQDETRCLITFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHHRERINGR 141 ****************************************************************998765322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-4	60	130	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.13	61	125	IPR017877	Myb-like domain
SMART	SM00717	2.5E-4	65	127	IPR001005	SANT/Myb domain
CDD	cd12203	9.17E-27	67	132	No hit	No description
Pfam	PF13837	1.5E-18	68	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MYLQPEKPRP LDLAATEEDG EMMLEVVTND GLPPHHHPVV IGGGPPGGGE SSGSEELEIK 60 APKKRAETWV QDETRCLITF RREVDGLFNT SKSNKHLWEQ ISAKMRDKGF DRSPTMCTDK 120 WRNLLKEFKK AKHHRERING RDGSCGSVKM LYYKELEDLL CDRTKNAMNN VINAISPFPA 180 APATTPTAAN SSYIHFSDKG LEDANIPYGS AEAGDRSAVN LERQLDHESD PLALTTTDAV 240 TAGGLPPWSW RETPGSGGEG NSYCGRVISV KYGEYTRRIG IDGTADAIKE AIKSAFRLRT 300 KRAFWLEDED QVVRTLDRDM PIGTYTLHLD EGITIKICLY HDSDRITTEE ATLYTEDDLR 360 NLLARRGLSG LREIDSYRSV DTLDDLRPGA VYQDARLMGE *

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MYLQPEKPRP LDLAATEEDG EMMLEVVTND GLPPHHHPVV IGGGPPGGGE SSGSEELEIK  60
APKKRAETWV QDETRCLITF RREVDGLFNT SKSNKHLWEQ ISAKMRDKGF DRSPTMCTDK  120
WRNLLKEFKK AKHHRERING RDGSCGSVKM LYYKELEDLL CDRTKNAMNN VINAISPFPA  180
APATTPTAAN SSYIHFSDKG LEDANIPYGS AEAGDRSAVN LERQLDHESD PLALTTTDAV  240
TAGGLPPWSW RETPGSGGEG NSYCGRVISV KYGEYTRRIG IDGTADAIKE AIKSAFRLRT  300
KRAFWLEDED QVVRTLDRDM PIGTYTLHLD EGITIKICLY HDSDRITTEE ATLYTEDDLR  360
NLLARRGLSG LREIDSYRSV DTLDDLRPGA VYQDARLMGE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	4e-45	63	155	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_130.35

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021890392.1	0.0	trihelix transcription factor GT-4-like isoform X1
Swissprot	Q9FX53	1e-148	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U7ZCD8	1e-178	A0A1U7ZCD8_NELNU; trihelix transcription factor GT-1-like
STRING	evm.model.supercontig_130.35	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68
Representative plant	OGRP5933	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-144	Trihelix family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_130.35

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]