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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_130.35 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Trihelix | ||||||||
Protein Properties | Length: 401aa MW: 44707.1 Da PI: 5.2587 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.4 | 5.9e-26 | 69 | 141 | 2 | 74 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 W ++e+++Li++rre++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ + + evm.model.supercontig_130.35 69 WVQDETRCLITFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHHRERINGR 141 ****************************************************************998765322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.7E-4 | 60 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.13 | 61 | 125 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.5E-4 | 65 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.17E-27 | 67 | 132 | No hit | No description |
Pfam | PF13837 | 1.5E-18 | 68 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MYLQPEKPRP LDLAATEEDG EMMLEVVTND GLPPHHHPVV IGGGPPGGGE SSGSEELEIK 60 APKKRAETWV QDETRCLITF RREVDGLFNT SKSNKHLWEQ ISAKMRDKGF DRSPTMCTDK 120 WRNLLKEFKK AKHHRERING RDGSCGSVKM LYYKELEDLL CDRTKNAMNN VINAISPFPA 180 APATTPTAAN SSYIHFSDKG LEDANIPYGS AEAGDRSAVN LERQLDHESD PLALTTTDAV 240 TAGGLPPWSW RETPGSGGEG NSYCGRVISV KYGEYTRRIG IDGTADAIKE AIKSAFRLRT 300 KRAFWLEDED QVVRTLDRDM PIGTYTLHLD EGITIKICLY HDSDRITTEE ATLYTEDDLR 360 NLLARRGLSG LREIDSYRSV DTLDDLRPGA VYQDARLMGE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 4e-45 | 63 | 155 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_130.35 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021890392.1 | 0.0 | trihelix transcription factor GT-4-like isoform X1 | ||||
Swissprot | Q9FX53 | 1e-148 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A1U7ZCD8 | 1e-178 | A0A1U7ZCD8_NELNU; trihelix transcription factor GT-1-like | ||||
STRING | evm.model.supercontig_130.35 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 | Representative plant | OGRP5933 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-144 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_130.35 |
Publications ? help Back to Top | |||
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