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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_13.48 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 410aa MW: 46388.1 Da PI: 7.6981 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.8 | 3.8e-38 | 150 | 296 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec 73 k+drhski T++g+RdRR+Rls+e+a++fF Lqd+LG+ k+skt+eWLl qa ++ik+l+++ ++ss sec evm.model.supercontig_13.48 150 CKRDRHSKINTAKGPRDRRMRLSLEVAKEFFGLQDMLGYEKASKTVEWLLIQARTEIKKLVKSfpgrtnyscstGASSTSEC 231 69**************************************************************999999998766666888 PP TCP 74 eaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 e s ++++++ + + ++++k k+ +k+a + lak+ rakar+rar rtrek ++ evm.model.supercontig_13.48 232 EVISGILNSGTHKRNkaketdiSLLAKEKKIKQLRKRA--FCPLAKDLRAKARERARARTREKFWNR 296 55555555554444445555422222222333444444..699********************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-39 | 151 | 292 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.695 | 151 | 209 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.451 | 275 | 292 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MFPSISINND INNTDLFSYE IDQSILLKPF LSEISIPNSK QLDDPLLSFF QLPSPFIHYF 60 DFELQDPEPN FLQPSHSNHD EILLNQQQQH GQSGLIMMAD HTASETVSNM ADSSKNTHHS 120 FNNGSFSASK DCRTESTKQV ISTPDRKRSC KRDRHSKINT AKGPRDRRMR LSLEVAKEFF 180 GLQDMLGYEK ASKTVEWLLI QARTEIKKLV KSFPGRTNYS CSTGASSTSE CEVISGILNS 240 GTHKRNKAKE TDISLLAKEK KIKQLRKRAF CPLAKDLRAK ARERARARTR EKFWNRKLDE 300 ESKLRGEDQA KENYMNNQLA AAGSLSDHFE VAGDQESGTQ RHSNVNLSPK MIVPEVEEEI 360 INPQKGHLGI QEAAMVDESL VIMDKYWSPS SIDLNYLHHN GISQEVSSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_13.48 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021905457.1 | 0.0 | transcription factor TCP12 | ||||
Refseq | XP_021905458.1 | 0.0 | transcription factor TCP12 | ||||
STRING | evm.model.supercontig_13.48 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-26 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_13.48 |