PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

ERF

Protein Properties

Length: 248aa MW: 28023.6 Da PI: 8.8769

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_13.250	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.6	3.6e-19	116	166	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g evm.model.supercontig_13.250 116 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAFAYDRAAYRMRG 166 7******.*******9987..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	9.9E-32	115	175	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.236	116	174	IPR001471	AP2/ERF domain
SMART	SM00380	5.1E-38	116	180	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-23	116	176	IPR016177	DNA-binding domain
CDD	cd00018	5.78E-30	116	175	No hit	No description
Pfam	PF00847	3.1E-13	116	166	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	117	128	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.0E-10	140	156	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0051301	Biological Process	cell division
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MAVEYHFPHH RSSSFTSLIP CLTENWGALP LKVDDSEDMI IYNSLRDALH FGWSPLDLTE 60 RTVKAEPTDE LEITAPVKQG INQQLESAYV APKSENGSVS SPERQEKILQ KPRGRHYRGV 120 RQRPWGKFAA EIRDPAKNGA RVWLGTYETA EEAAFAYDRA AYRMRGSKAL LNFPHRLGSN 180 EPEPVRITAK RREPEPSTRL ASDSDLAKRL KASASAKEAE LDMERVNTLQ FQYRMGYVPV 240 GEQLLVR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-37	113	181	2	70	ATERF1
3gcc_A	6e-37	113	181	2	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_13.250

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethylene. {ECO:0000269\|PubMed:10945353}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC777372	0.0	KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021905730.1	0.0	ethylene-responsive transcription factor 2-like
Swissprot	Q9LW50	7e-95	ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBL	T1SFS0	0.0	T1SFS0_CARPA; Ethylene responsive element binding factor-like
STRING	evm.model.supercontig_13.250	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17500.1	1e-47	ethylene responsive element binding factor 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_13.250

Publications ? help Back to Top
Huang CY, et al. Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5 [PMID:23940319]