PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

MYB_related

Protein Properties

Length: 320aa MW: 34590.7 Da PI: 9.9845

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_13.248	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.7	6.1e-14	89	134	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE+ l++++ +++G+g+W I++++ k+Rt+ q+ s+ qky evm.model.supercontig_13.248 89 NPWSEEEHRLFLNGLEKMGKGDWIGISKKFVKTRTPTQIASHAQKY 134 69*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.11	83	139	IPR017930	Myb domain
SuperFamily	SSF46689	5.98E-16	85	139	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-15	86	137	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.9E-11	87	133	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-9	87	137	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-11	89	134	IPR001005	SANT/Myb domain
CDD	cd00167	2.12E-9	90	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVKESARKCG HCGLNGHNSR TCNGNGGDKS SFRLFGVDIV ENKEPAIVKK SQSFGDLQPL 60 ADKHEATDSG YSSDSQINSK KRSERKKGNP WSEEEHRLFL NGLEKMGKGD WIGISKKFVK 120 TRTPTQIASH AQKYFLFLAS KDKRKRRTSV FDVALEQSEP KVEDSSDGTP ETLPQTNEGM 180 PVLEAANAGA TSMQSANTVG ITQQASNSPS GPVPTHFPLF PLIPASAISN YRRNGGRKIL 240 MPLPSPYVTV MNNGIPIRYV QLAQSSWNGR VSLQPISAGP ATSISSSSRT DPLELTLNGP 300 SNPNSQTSNT HPNDVINAQ*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00573	DAP	Transfer from AT5G61620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_13.248

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC777372	1e-146	KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021905522.1	0.0	probable transcription factor At5g61620
TrEMBL	T1SFX5	0.0	T1SFX5_CARPA; Myb-like transcription factor family protein
STRING	evm.model.supercontig_13.248	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6021	27	47
Representative plant	OGRP394	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61620.1	1e-57	MYB_related family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_13.248

Publications ? help Back to Top
Huang CY, et al. Tandem oleosin genes in a cluster acquired in Brassicaceae created tapetosomes and conferred additive benefit of pollen vigor. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14480-5 [PMID:23940319]