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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_13.246 |
Common Name | 1, At5g61620-like |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
MYB_related |
Protein Properties |
Length: 326aa MW: 34672 Da PI: 10.0158 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_13.246 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 41.1 | 4e-13 | 89 | 134 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++W++eE+ l++ + +++G+g+W I++++ ++Rt+ q+ s+ qky
evm.model.supercontig_13.246 89 NPWSEEEHRLFLAGLEKMGKGDWIGISKKFVNTRTPTQIASHAQKY 134
69*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MVKESARKCG HCGLNGHNSR TCNGNGGDKS SFRLFGVDIL ENKEPAIVKK SRSLGDLQPL 60 ADKHEAADSG YSSDTQIISQ KSTERKKGNP WSEEEHRLFL AGLEKMGKGD WIGISKKFVN 120 TRTPTQIASH AQKYFLRLAS IDKRKRRTSV FDITLEQSKS KIEDFSNGNP ETLPQGMPVM 180 EAANAGANSM QSANGVGVTQ QASNSPSVPV PTHFPLLPLI PASAVSNYRR NGGKILMPLP 240 SPFVSVMNYG IPTSYVQLAQ SLWNVGSTGG VGTQPLGLLG PISAGPATSI SSSTRSDPLG 300 LTLNGPSNPN SQTSNTNPNE VINGQ*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC777372 | 1e-162 | KC777372.1 Carica papaya PEI1-like (At5g07500-like), myb-like transcription factor family protein (At5g61620-like 1), myb-like transcription factor family protein (At5g61620-like 2), myb-like transcription factor family protein (At5g61620-like 3), oleosin-like (cpOLE4), and ethylene responsive element binding factor-like (At5g07580-like) genes, complete cds. |