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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
evm.model.supercontig_129.72 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family |
GRF |
Protein Properties |
Length: 611aa MW: 65013.2 Da PI: 7.7065 |
Description |
GRF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
evm.model.supercontig_129.72 | genome | ASGPB | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRC | 76.6 | 2.6e-24 | 226 | 270 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
evm.model.supercontig_129.72 226 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 270
79****************************************985 PP
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2 | QLQ | 55.7 | 1.5e-19 | 156 | 192 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
++F+++Q+ +L++Q+l+yKy+ an+PvP++Ll+ ++k
evm.model.supercontig_129.72 156 GPFSPSQWIELEHQALIYKYITANVPVPSNLLMSLKK 192
59******************************99875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 611 aa
Download sequence Send
to blast |
MDFGVLGLEG LVGPESAGAS SQPPPAPDTN HNVLGSGFVR QERSRPGEDD WRTSKVAKTM 60 PLHQATTSPL LRSNTNSAVA ADTSSQQGHM LSFSSAQSEV PFLTRDCGML LQRSSQNTPP 120 YHQPTAATAS GYARNAGYVS GSLNATMHGH FAGGRGPFSP SQWIELEHQA LIYKYITANV 180 PVPSNLLMSL KKSLYPFSLT GSSAGSLSSN SLGWGSFHLG FSGSTDPEPG RCRRTDGKKW 240 RCSRDAVADQ KYCERHINRG RHRSRKPVEG QIGHAATGPA ANSKLAVVPP MTSSMSSTSA 300 IVPSSGAPNS LAISQHQLKN LKPVVANRPN PSADSLINRV QDPCDLSTLS SAINGKSNNT 360 AFSIQKQDIL LEESSHSEFG LVSSDSLLNP SQRSGYMSSK NYVSYLDFGD QETQEQHPFH 420 QFMDDWPKDQ SNHSVITWHE ELKSDWTQLS MSIPMPSSEF SSSTSSPTQE KLALSPLRLS 480 RELDPAIQMG LRLNSNIGEL SKKRNNMVPP ISWGSSMGGP LGEVLTSTSN SLATIKNSSA 540 ALNLISEGWD GSPQLGSSPT GVLQKSAFGS LSNSSSGSSS IAENKKGNEG ASLCDDVLGS 600 SLASSSIPSM *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM488616 | 2e-52 | AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence. |
Publications
? help Back to Top |
- Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] - Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] - Cao Y,Han Y,Jin Q,Lin Y,Cai Y
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]
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