PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_128.55
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 482aa    MW: 52636 Da    PI: 7.4755
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_128.55genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.51.5e-1793189186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm............rergferspkqCkekwenlnkrykkikegek 69 
                                   +W++  + +L++a++e+ ++l+rg+l++ +Weev++++            +++++ +s +qCk+k++nl+kryk++ ++++
  evm.model.supercontig_128.55  93 EWSDVAIDCLLDAYTEKFNQLNRGNLRGRDWEEVAEAVsegsgggdekigQRQKMWKSVEQCKNKIDNLKKRYKAELQRMS 173
                                   5***************************************************************************99999 PP

                      trihelix  70 krtsessstcpyfdqle 86 
                                   +    s+s++ +f+++e
  evm.model.supercontig_128.55 174 SS-GMSTSHWHWFKKIE 189
                                   95.778889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.6E-1991191No hitNo description
Gene3DG3DSA:3.40.1160.103.8E-69239474IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536335.76E-57241474IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.625241475IPR015963Uridylate kinase, bacteria
CDDcd042541.30E-114244475No hitNo description
PfamPF006966.9E-22245454IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MASRDFPLID PHAPTRHHQE DPVSTEYYHH PFIDAESDPE KSDSGNPAKP NPYYYSGIAG  60
NKRQKPNGSL NAGESGSAST PESRSDYRKD REEWSDVAID CLLDAYTEKF NQLNRGNLRG  120
RDWEEVAEAV SEGSGGGDEK IGQRQKMWKS VEQCKNKIDN LKKRYKAELQ RMSSSGMSTS  180
HWHWFKKIEA IMGNPGTNRV AESEERGGAA ASCNLNRQAK RCVPINSSFT NNLKPKSLQA  240
LKWRRVVFKI SGSALAGNCQ SIDPKVAMQV AREVATACRQ GVEVAIVVGG RNFFCGDSWV  300
SATGLDRPTA YQIGMMATVM NSILLQSAFE KLGVQTRVQS AFSLPEVAEL YSRQRTIQHL  360
EKGRVVIFGG VGAGTGNPLF TTDTAAALRA FEINADVVLK GTNYNGIYDC QSGNGNIVLD  420
HISFREAATR GITSIDTMAV TYCEDNGIPV VVFNMHEPGN ISRALCGEPV GTLIDQAGQI  480
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-622374743239Uridylate kinase
3ek5_B3e-622374743239Uridylate kinase
3ek5_C3e-622374743239Uridylate kinase
3ek5_D3e-622374743239Uridylate kinase
3ek5_E3e-622374743239Uridylate kinase
3ek5_F3e-622374743239Uridylate kinase
3ek6_A3e-622374743239Uridylate kinase
3ek6_B3e-622374743239Uridylate kinase
3ek6_C3e-622374743239Uridylate kinase
3ek6_D3e-622374743239Uridylate kinase
3ek6_E3e-622374743239Uridylate kinase
3ek6_F3e-622374743239Uridylate kinase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_128.55
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890635.10.0uncharacterized protein LOC110809186
TrEMBLF6I5U80.0F6I5U8_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_128.550.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-167Trihelix family protein