PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_128.45
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family Trihelix
Protein Properties Length: 457aa    MW: 53706.6 Da    PI: 7.4347
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_128.45genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.45.2e-3082167187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                                   rW++qe+l+L+++r++++++++++++k+plW evs+ m +e+g+ers k+C+ek+enl k+ykk+keg+ +r  ++ ++++
  evm.model.supercontig_128.45  82 RWPRQETLTLLQIRSRLDSKFKEANQKGPLWNEVSRIMlEEHGYERSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYR 160
                                   8*************************************99******************************98..55667** PP

                      trihelix  81 yfdqlea 87 
                                   +f+qlea
  evm.model.supercontig_128.45 161 FFRQLEA 167
                                   *****85 PP
2trihelix43.21e-133544142686
                      trihelix  26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                                   l  + Wee+  km   g+er++++Ckekwen++  +  i+e +kkr+++ ++  +yf++le
  evm.model.supercontig_128.45 354 LPRGIWEEIEGKMGCLGYERTSNECKEKWENMQINFNIITECNKKRKEDLRNYRSYFQELE 414
                                   55678*****************************************999999999****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.89975140IPR017877Myb-like domain
SMARTSM007170.1279142IPR001005SANT/Myb domain
PfamPF138373.7E-2081168No hitNo description
CDDcd122039.95E-2081147No hitNo description
SMARTSM007177.6280388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-4282299IPR009057Homeodomain-like
PROSITE profilePS500905.842352386IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-4355385IPR009057Homeodomain-like
PfamPF138375.5E-9357414No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGENDDGQYE LTDLRRVLAG RNQYFPANPQ PQNPDYDHHH FLHRNMLQQS AATSRLVLPP  60
VAAAGGSVGF DHNHFNDTNH SRWPRQETLT LLQIRSRLDS KFKEANQKGP LWNEVSRIML  120
EEHGYERSGK KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG ADRTNQPNQD  180
QSLSYSNNTS DQFETSSSTD NNDQNHDLSA IAFMMNQTQK RENDVDQFHG CERVRSRRGW  240
KEKVKEFVES EMRKVMEKQE VWMENMVKNI EEREKERLCK EEEWRKNEVA RLNLVHESWV  300
KERAKVEARD AALMEVLNKL TSKRVPQVSS SHIQSSELSS LGLPRSYQET SGYLPRGIWE  360
EIEGKMGCLG YERTSNECKE KWENMQINFN IITECNKKRK EDLRNYRSYF QELEQPYNGG  420
QQNISKERLE INEDLSSNSY GDNLTHQWGL LSHSQK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_128.45
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840631e-37AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBankAC2144191e-37AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890530.10.0trihelix transcription factor PTL-like
SwissprotQ9LZS08e-84PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A061FPI81e-131A0A061FPI8_THECC; Transcription factor, putative
STRINGevm.model.supercontig_128.450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Representative plantOGRP8402716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.16e-74Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]